{"title":"利用 DNA 光幕进行实时单分子可视化,揭示 DNA 修复途径的分子机制","authors":"Subin Kim , Youngseo Kim , Ja Yil Lee","doi":"10.1016/j.dnarep.2023.103612","DOIUrl":null,"url":null,"abstract":"<div><p>The demand for direct observation of biomolecular interactions provides new insights into the molecular mechanisms underlying many biological processes. Single-molecule imaging techniques enable real-time visualization of individual biomolecules, providing direct observations of protein machines. Various single-molecule imaging techniques have been developed and have contributed to breakthroughs in biological research. One such technique is the DNA curtain, a novel, high-throughput, single-molecule platform that integrates lipid fluidity, nano-fabrication, microfluidics, and fluorescence imaging. Many DNA metabolic reactions, such as replication, transcription, and chromatin dynamics, have been studied using DNA curtains. In particular, the DNA curtain platform has been intensively applied in investigating the molecular details of DNA repair processes. This article reviews DNA curtain techniques and their applications for imaging DNA repair proteins.</p></div>","PeriodicalId":300,"journal":{"name":"DNA Repair","volume":"133 ","pages":"Article 103612"},"PeriodicalIF":3.0000,"publicationDate":"2023-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1568786423001660/pdfft?md5=4c516c10215a61097ccbe73977dfb3d0&pid=1-s2.0-S1568786423001660-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Real-time single-molecule visualization using DNA curtains reveals the molecular mechanisms underlying DNA repair pathways\",\"authors\":\"Subin Kim , Youngseo Kim , Ja Yil Lee\",\"doi\":\"10.1016/j.dnarep.2023.103612\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The demand for direct observation of biomolecular interactions provides new insights into the molecular mechanisms underlying many biological processes. Single-molecule imaging techniques enable real-time visualization of individual biomolecules, providing direct observations of protein machines. Various single-molecule imaging techniques have been developed and have contributed to breakthroughs in biological research. One such technique is the DNA curtain, a novel, high-throughput, single-molecule platform that integrates lipid fluidity, nano-fabrication, microfluidics, and fluorescence imaging. Many DNA metabolic reactions, such as replication, transcription, and chromatin dynamics, have been studied using DNA curtains. In particular, the DNA curtain platform has been intensively applied in investigating the molecular details of DNA repair processes. This article reviews DNA curtain techniques and their applications for imaging DNA repair proteins.</p></div>\",\"PeriodicalId\":300,\"journal\":{\"name\":\"DNA Repair\",\"volume\":\"133 \",\"pages\":\"Article 103612\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2023-12-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S1568786423001660/pdfft?md5=4c516c10215a61097ccbe73977dfb3d0&pid=1-s2.0-S1568786423001660-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"DNA Repair\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1568786423001660\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"DNA Repair","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1568786423001660","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0
摘要
对生物分子相互作用进行直接观察的需求为了解许多生物过程的分子机制提供了新的视角。单分子成像技术可实现单个生物分子的实时可视化,提供对蛋白质机器的直接观察。目前已开发出多种单分子成像技术,为生物研究取得突破性进展做出了贡献。DNA 帷幕就是其中之一,它是一种新型、高通量、单分子平台,集脂质流动性、纳米制造、微流控和荧光成像于一体。许多 DNA 代谢反应,如复制、转录和染色质动力学,都是利用 DNA 门帘进行研究的。特别是,DNA帷幕平台已被广泛应用于研究DNA修复过程的分子细节。本文回顾了DNA帘技术及其在DNA修复蛋白成像中的应用。
Real-time single-molecule visualization using DNA curtains reveals the molecular mechanisms underlying DNA repair pathways
The demand for direct observation of biomolecular interactions provides new insights into the molecular mechanisms underlying many biological processes. Single-molecule imaging techniques enable real-time visualization of individual biomolecules, providing direct observations of protein machines. Various single-molecule imaging techniques have been developed and have contributed to breakthroughs in biological research. One such technique is the DNA curtain, a novel, high-throughput, single-molecule platform that integrates lipid fluidity, nano-fabrication, microfluidics, and fluorescence imaging. Many DNA metabolic reactions, such as replication, transcription, and chromatin dynamics, have been studied using DNA curtains. In particular, the DNA curtain platform has been intensively applied in investigating the molecular details of DNA repair processes. This article reviews DNA curtain techniques and their applications for imaging DNA repair proteins.
期刊介绍:
DNA Repair provides a forum for the comprehensive coverage of DNA repair and cellular responses to DNA damage. The journal publishes original observations on genetic, cellular, biochemical, structural and molecular aspects of DNA repair, mutagenesis, cell cycle regulation, apoptosis and other biological responses in cells exposed to genomic insult, as well as their relationship to human disease.
DNA Repair publishes full-length research articles, brief reports on research, and reviews. The journal welcomes articles describing databases, methods and new technologies supporting research on DNA repair and responses to DNA damage. Letters to the Editor, hot topics and classics in DNA repair, historical reflections, book reviews and meeting reports also will be considered for publication.