IF 2.2 4区 生物学Q4 BIOCHEMISTRY & MOLECULAR BIOLOGYYeastPub Date : 2024-01-01Epub Date: 2023-12-26DOI:10.1002/yea.3920
Macarena Araya, Pablo Villarreal, Tomás Moyano, Ana R O Santos, Francisca P Díaz, Andrea Bustos-Jarufe, Kamila Urbina, Javier E Del Pino, Marizeth Groenewald, Rodrigo A Gutiérrez, Carlos A Rosa, Francisco A Cubillos
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A neighbor-joining analysis using the sequences of the D1/D2 domains of the large subunit ribosomal RNA gene revealed that N. atacamensis clustered with Nakazawaea pomicola. The sequence of N. atacamensis differed from closely related species by 1.3%-5.2% in the D1/D2 domains. A phylogenomic analysis based on single-nucleotide polymorphism's data confirms that the novel species belongs to the genus Nakazawaea, where N. atacamensis clustered with N. peltata. Phenotypic comparisons demonstrated that N. atacamensis exhibited distinct carbon assimilation patterns compared to its related species. Genome sequencing of the strain ATA-11A-B<sup>T</sup> revealed a genome size of approximately 12.4 Mbp, similar to other Nakazawaea species, with 5116 protein-coding genes annotated using InterProScan. In addition, N. atacamensis exhibited the capacity to ferment synthetic wine must, representing a potential new yeast for mono or co-culture wine fermentations. This comprehensive study expands our understanding of the genus Nakazawaea and highlights the ecological and industrial potential of N. atacamensis in fermentation processes. The holotype of N. atacamensis sp. nov. is CBS 18375<sup>T</sup> . 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引用次数: 0
摘要
在本研究中,我们描述了从智利阿塔卡马沙漠(Atacama Desert)的Neltuma chilensis植物样本中获得的新物种Nakazawaea atacamensis f. a., sp.从独立的 N. chilensis 样本(异名 Prosopis chilensis, Algarrobo)中总共获得了三株 N. atacamensis。其中两株是从树皮样本中获得的,第三株是从另一棵树的树皮渗出的树胶中获得的。利用分子特征对这一新物种进行了定义,并对其形态、生理和生化特性进行了鉴定。利用大亚基核糖体 RNA 基因 D1/D2 域序列进行的邻接分析表明,N. atacamensis 与 Nakazawaea pomicola 聚类。在 D1/D2 结构域中,N. atacamensis 与近缘种的序列相差 1.3%-5.2%。基于单核苷酸多态性数据的系统发生组分析证实,该新物种属于 Nakazawaea 属,其中 N. atacamensis 与 N. peltata 聚类。表型比较表明,与相关物种相比,N. atacamensis 表现出独特的碳同化模式。菌株 ATA-11A-BT 的基因组测序显示,其基因组大小约为 12.4 Mbp,与其他 Nakazawaea 物种相似,使用 InterProScan 对 5116 个蛋白编码基因进行了注释。此外,N. atacamensis 还具有发酵合成葡萄酒汁的能力,是一种潜在的用于单培养或共培养葡萄酒发酵的新酵母。这项全面的研究拓展了我们对 Nakazawaea 属的了解,并强调了 N. atacamensis 在发酵过程中的生态和工业潜力。N. atacamensis sp.Mycobank 编号为 MB 849680。
Nakazawaea atacamensis f.a., sp. nov. a novel nonconventional fermentative ascomycetous yeast species from the Atacama Desert.
In this study, we describe Nakazawaea atacamensis f. a., sp. nov., a novel species obtained from Neltuma chilensis plant samples in Chile's hyperarid Atacama Desert. In total, three strains of N. atacamensis were obtained from independent N. chilensis samples (synonym Prosopis chilensis, Algarrobo). Two strains were obtained from bark samples, while the third strain was obtained from bark-exuded gum from another tree. The novel species was defined using molecular characteristics and subsequently characterized with respect to morphological, physiological, and biochemical properties. A neighbor-joining analysis using the sequences of the D1/D2 domains of the large subunit ribosomal RNA gene revealed that N. atacamensis clustered with Nakazawaea pomicola. The sequence of N. atacamensis differed from closely related species by 1.3%-5.2% in the D1/D2 domains. A phylogenomic analysis based on single-nucleotide polymorphism's data confirms that the novel species belongs to the genus Nakazawaea, where N. atacamensis clustered with N. peltata. Phenotypic comparisons demonstrated that N. atacamensis exhibited distinct carbon assimilation patterns compared to its related species. Genome sequencing of the strain ATA-11A-BT revealed a genome size of approximately 12.4 Mbp, similar to other Nakazawaea species, with 5116 protein-coding genes annotated using InterProScan. In addition, N. atacamensis exhibited the capacity to ferment synthetic wine must, representing a potential new yeast for mono or co-culture wine fermentations. This comprehensive study expands our understanding of the genus Nakazawaea and highlights the ecological and industrial potential of N. atacamensis in fermentation processes. The holotype of N. atacamensis sp. nov. is CBS 18375T . The Mycobank number is MB 849680.
期刊介绍:
Yeast publishes original articles and reviews on the most significant developments of research with unicellular fungi, including innovative methods of broad applicability. It is essential reading for those wishing to keep up to date with this rapidly moving field of yeast biology.
Topics covered include: biochemistry and molecular biology; biodiversity and taxonomy; biotechnology; cell and developmental biology; ecology and evolution; genetics and genomics; metabolism and physiology; pathobiology; synthetic and systems biology; tools and resources