二硫化相关lncRNA是预测肝细胞癌患者免疫反应和预后的潜在生物标记物

IF 2.6 Q2 GASTROENTEROLOGY & HEPATOLOGY Hepatic Medicine : Evidence and Research Pub Date : 2023-12-27 eCollection Date: 2023-01-01 DOI:10.2147/HMER.S435726
Qian Wei, Yu-Chao Hou, Fei-Fei Mao, Jin-Kai Feng, Xu Wang, Shu-Qun Cheng
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引用次数: 0

摘要

目的:肝细胞癌(HCC)是一种流行于全球的癌症。以肌动蛋白细胞骨架脆弱为特征的二硫化血症是一种独特的细胞死亡类型,有望成为新型癌症疗法。然而,与二硫化相关的长非编码 RNA(lncRNA)与 HCC 之间的联系仍有待探索。本研究采用一种硅学方法提供了二硫化相关lncRNAs的新型生物标志物,用于预测HCC的免疫反应和预后:为了填补这一空白,我们整合了癌症基因组图谱(The Cancer Genome Atlas,TCGA)中的HCC转录组数据,并确定了与二硫化硫和lncRNAs表现出差异表达的基因。通过共表达分析,我们发现了与二硫化硫相关的 lncRNA。随后,通过单变量Cox回归分析和最小绝对收缩与选择算子(LASSO),构建了二硫化血症相关lncRNA的模型。该风险模型通过多种分析方法进行了评估,包括功能富集注释、Kaplan-Meier分析、主成分分析(PCA)、免疫浸润和免疫状态分析以及肿瘤突变分析。此外,我们还讨论了该模型在预测药物敏感性方面的意义:我们的研究最终构建了一个二硫化相关lncRNA模型,该模型由四个预后性二硫化相关lncRNA(ACYTOR、NRAV、AL080248.1和AC069307.1)组成。该模型对 HCC 患者具有卓越的诊断价值,对指导临床医生根据个体差异进行个性化免疫疗法和药物选择具有实际意义:总之,我们的研究介绍了一种利用二硫化相关 lncRNA 的新型预测工具,为 HCC 的治疗管理提供了潜在的指导。
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Disulfidptosis-Associated lncRNAs are Potential Biomarkers for Predicting Immune Response and Prognosis Within Individuals Diagnosed with Hepatocellular Carcinoma.

Purpose: Hepatocellular carcinoma (HCC) is a prevalent form of cancer that is distributed globally. Disulfidptosis, characterized by the fragility of the actin cytoskeleton, represents a distinct type of cell death and holds promise for novel cancer therapies. Nevertheless, the connection among disulfidptosis-associated long non-coding RNAs (lncRNAs) and HCC is still unexplored. This study uses an in silico approach to provide the novel biomarkers of disulfidptosis-associated lncRNAs for predicting the immune response and prognosis with HCC.

Methods: In order to address this gap, we integrated transcriptomic data of HCC from The Cancer Genome Atlas (TCGA) and identified genes that exhibit differential expression with disulfidptosis and lncRNAs. Through co-expression analysis, we identified disulfidptosis-related lncRNAs. Afterwards, by employing univariate Cox regression analysis and the least absolute shrinkage and selection operator (LASSO), a model for disulfidptosis-associated lncRNA was constructed. The risk model underwent assessment through the utilization of diverse analytical methodologies, including functional enrichment annotation, Kaplan-Meier analysis, principal component analysis (PCA), immune infiltration and immune status analysis, as well as tumor mutation analysis. Furthermore, we discussed the implications of the model in predicting drug sensitivity.

Results: Our study culminated in the construction of a disulfidptosis-related lncRNA model comprising four prognostic disulfidptosis-related lncRNAs (ACYTOR, NRAV, AL080248.1, and AC069307.1). This model demonstrates exceptional diagnostic value for HCC patients and holds practical implications for guiding clinicians in personalizing immunotherapy and drug selection based on individual variations.

Conclusion: In summary, our research introduces a novel predictive tool utilizing disulfidptosis-related lncRNAs, offering potential guidance for the therapeutic management of HCC.

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来源期刊
Hepatic Medicine : Evidence and Research
Hepatic Medicine : Evidence and Research GASTROENTEROLOGY & HEPATOLOGY-
自引率
0.00%
发文量
15
审稿时长
16 weeks
期刊介绍: Hepatic Medicine: Evidence and Research is an international, peer-reviewed, open access, online journal. Publishing original research, reports, editorials, reviews and commentaries on all aspects of adult and pediatric hepatology in the clinic and laboratory including the following topics: Pathology, pathophysiology of hepatic disease Investigation and treatment of hepatic disease Pharmacology of drugs used for the treatment of hepatic disease Although the main focus of the journal is to publish research and clinical results in humans; preclinical, animal and in vitro studies will be published where they will shed light on disease processes and potential new therapies. Issues of patient safety and quality of care will also be considered. As of 1st April 2019, Hepatic Medicine: Evidence and Research will no longer consider meta-analyses for publication.
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