NCPAD2 是包括肺癌在内的多种癌症的预后预测和免疫治疗生物标志物。

IF 2.7 4区 医学 Q2 GENETICS & HEREDITY Genes and Environment Pub Date : 2024-01-03 DOI:10.1186/s41021-023-00291-4
Linyuan Feng, Yang Yang, Zhenhua Lin, Minghua Cui, Aihua Jin, Aili Cui
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引用次数: 0

摘要

背景:非SMC凝集素I复合体亚基D2(NCAPD2)属于染色体结构维持家族。尽管对 NCAPD2 在有丝分裂过程中对染色体的不同贡献已有深入研究,但对 NCAPD2 在泛癌症中的表达却知之甚少。因此,我们利用生物信息学数据集对 NCAPD2 进行了泛癌症分析,以确定其在肿瘤中的调控作用:方法:我们利用多个在线数据库分析了泛癌症中 NCAPD2 的基因表达、蛋白水平、患者存活率和功能富集。使用 cBioPortal 和 SangerBox 分析了 NCAPD2 的基因改变和肿瘤干细胞。利用 GSCA 和 CellMiner 探索了 NCAPD2 与药物敏感性之间的关系。通过 ROC 曲线评估了预后的诊断价值。随后,利用 TIMER1 和 TISIDB 分析了 NCAPD2 在肺腺癌(LUAD)和肺鳞癌(LUSC)中的免疫浸润水平和免疫亚型:结果:在大多数癌症中,NCAPD2基因表达量明显较高,且与临床分期和预后不良有关。NCAPD2基因组的异质性促进了肿瘤的发生和发展。GO富集分析表明,NCAPD2可能参与了DNA修复和免疫反应。NCAPD2参与了LUAD和LUSC的免疫浸润。ROC曲线显示,NCAPD2对LUAD和LUSC具有重要的预后诊断价值。此外,NCAPD2对托泊替康(topotecan)药物敏感,这可能是一种最佳的免疫疗法:结论:研究发现,NCAPD2在泛癌中过度表达,这与不良预后有关。重要的是,NCAPD2可作为LUAD和LUSC的诊断标志物和免疫相关生物标志物。
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NCPAD2 is a favorable predictor of prognostic and immunotherapeutic biomarker for multiple cancer types including lung cancer.

Background: Non-SMC condensin I complex subunit D2 (NCAPD2) belongs to the chromosomal structural maintenance family. While the different contribution of NCAPD2 to chromosome in mitosis have been thoroughly investigated, much less is known about the expression of NCAPD2 in pan-cancer. Thus, we used a bioinformatics dataset to conduct a pan-cancer analysis of NCAPD2 to determine its regulatory role in tumors.

Methods: Multiple online databases were analyzed NCAPD2 gene expression, protein level, patient survival and functional enrichment in pan-cancer. Genetic alteration and tumor stemness of NCAPD2 were analyzed using cBioPortal and SangerBox. The GSCA and CellMiner were used to explore the relationship between NCAPD2 and drug sensitivity. The diagnostic value of prognosis was evaluated by ROC curve. Subsequently, the immune infiltration level and immune subtype of NCAPD2 in lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) were analyzed using TIMER1 and TISIDB.

Results: NCAPD2 gene expression was significantly higher in most cancers and associated with clinical stage and poor prognosis. Genomic heterogeneity of NCAPD2 promoted the occurrence and development of tumors. GO enrichment analysis suggested NCAPD2 might be involved in DNA repair and immune response. NCAPD2 was involved in immune infiltration of LUAD and LUSC. ROC curves showed that NCAPD2 has important prognosis diagnostic value in LUAD and LUSC. Moreover, NCAPD2 was drug sensitive to topotecan, which may be an optimize immunotherapy.

Conclusions: It was found that NCAPD2 was overexpressed in pan-cancers, which was associated with poor outcomes. Importantly, NCAPD2 could be a diagnostic marker and an immune related biomarker for LUAD and LUSC.

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来源期刊
Genes and Environment
Genes and Environment Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
4.00
自引率
0.00%
发文量
24
审稿时长
27 weeks
期刊介绍: Genes and Environment is an open access, peer-reviewed journal that aims to accelerate communications among global scientists working in the field of genes and environment. The journal publishes articles across a broad range of topics including environmental mutagenesis and carcinogenesis, environmental genomics and epigenetics, molecular epidemiology, genetic toxicology and regulatory sciences. Topics published in the journal include, but are not limited to, mutagenesis and anti-mutagenesis in bacteria; genotoxicity in mammalian somatic cells; genotoxicity in germ cells; replication and repair; DNA damage; metabolic activation and inactivation; water and air pollution; ROS, NO and photoactivation; pharmaceuticals and anticancer agents; radiation; endocrine disrupters; indirect mutagenesis; threshold; new techniques for environmental mutagenesis studies; DNA methylation (enzymatic); structure activity relationship; chemoprevention of cancer; regulatory science. Genetic toxicology including risk evaluation for human health, validation studies on testing methods and subjects of guidelines for regulation of chemicals are also within its scope.
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