基于 F-ISSR 标记对印度喀拉拉邦部落专用薯蓣野生块茎种群进行基因分型

Deepthi Mohan, P. Manoj, N. P. Anish, S. Roshni, Anu Theresa Antony, Mariya Mary Gigi, C. Narayana
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引用次数: 0

摘要

薯蓣是一种主食作物,也是经济效益最高的块茎作物之一,在世界许多地方都有种植,由于其地下块茎,主要生长在热带国家。从印度喀拉拉邦部落地区采集的薯蓣样本。利用荧光标记 ISSR 引物(F-ISSR)对薯蓣样本进行了遗传多样性分析。在使用的 38 个引物中,8 个引物显示出多态性,每个引物观察到的多态位点数量各不相同。利用内氏相似度-距离矩阵确定了种群内的遗传距离,观察到 D. tomentosa 和 D. rotundata 之间的距离最大(0.5379)。采用算术平均分析的非加权配对组法评估比较数据,构建了 8 个聚类的附图。评估的条带大小从 80 到 600 bp 不等,并与标准条带大小进行了比对。D. alata(0.2686)和 D. oppositifolia(0.2892)在种群中的遗传多样性最高。与群体中的其他物种相比,D. esculenta 和 D. pentaphylla 的相似度最高。外来品种 D. rotundata 与群体中的其他成员形成了一个独特的群组。对薯蓣野生变种的分子标记辅助遗传多样性研究有助于解决与民间系统学有关的争议,并促进繁殖和保护技术的发展。
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F-ISSR Marker Based Genotyping of Wild Tuber Population of Dioscorea Exclusive to Tribal Utility in Kerala, India
Dioscorea is a staple food crop and one of the top tuber crops in terms of economic gain, is cultivated in many parts of the world and is mostly grown in tropical countries owing to its subterranean tubers. Dioscorea samples collected from tribal regions of Kerala state, India. Using fluorescently tagged ISSR primers (F-ISSR), genetic diversity analysis of Dioscorea samples was carried out. Out of 38 primers employed, 8 primers displayed polymorphism, with varying numbers of polymorphic loci observed for each primer. The genetic distance within the population was determined using Nei's similarity - distance matrix, maximum distance was observed between D. tomentosa and D. rotundata (0.5379). The unweighted pair-group approach with arithmetic mean analysis was used to assess the comparative data, resulting in the construction of adendrogram with 8 clusters. The bands assessed were ranged in size from 80- 600 bp were aligned with the size standard bands. D. alata (0.2686) and D. oppositifolia (0.2892) showed the highest genetic diversity within the population. Compared with other species in the population, D. esculenta and D. pentaphylla exhibited the highest degree of resemblance. D. rotundata, an exotic variety, formed a distinctive cluster from the other members of the population. Molecular marker-assisted genetic diversity studies on wild varieties of Dioscorea contribute to resolving disputes related to folk systematics and provide advancement in propagation and conservation techniques.
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