作为抗糖尿病候选药物的丝瓜藤潜在化合物的分子对接和药代动力学预测

Rahmawaty Hasan, R. Herowati, G. Widodo
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引用次数: 0

摘要

丝瓜是常用的治疗药物,但其作为糖尿病患者分子靶点作用替代疗法的巨大潜力尚不为人所知。生物信息学的初步研究旨在破译可与抗糖尿病治疗的蛋白质靶点相互作用的刺五加化合物。本研究旨在确定被认为能与胰岛素受体、醛糖还原酶和 PTP-1B 相互作用的潜在钝角苣苔属化合物,并预测其药物动力学和毒性。分子对接是在 AutoDock 4.2.6 中进行的,由准备大分子(PDB ID:1IR3;2PEV;4Y14)和配体、分子对接和可视化等阶段开始。药代动力学曲线是通过瑞士 ADME 和 Toxtree 毒性估计来预测的。结果表明,葫芦素 B、葫芦素 E、齐墩果酸、儿茶素、阿魏酸和芹菜素是最有可能与大分子相互作用的化合物,其结合能响应与原生配体相似。药代动力学预测表明,葫芦素 B 和葫芦素 E 偏离了一条利宾斯基规则(BM> 500),不会扩散到血脑屏障中,不是 CYP450 抑制剂,也被归类为 Pgp 底物。毒性预测表明,除了齐墩果酸和阿魏酸之外,所有潜在化合物都被归类为具有麻醉风险的高毒性化合物。这些化合物不是基因毒性或非基因毒性致癌物质。
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Molecular Docking and Pharmacokinetic Prediction of Potential Compounds from Luffa acutangula as Antidiabetic Candidates
Luffa acutangula is commonly used, but its considerable potential as an alternative treatment for diabetics with a molecular target action is not yet known. Preliminary study of bioinformatics to decipher the compounds of L. acutangulaable to interact with the protein targets of antidiabetic therapy. This study aims to identify the potential compounds of L. acutangula that are thought to interact with the insulin receptor, aldose reductase, and PTP-1B, as well as provide predictions of pharmacokinetics and toxicity. Molecular docking was conducted in AutoDock 4.2.6 with the stages initiated by the preparation of macromolecules (PDB ID: 1IR3; 2PEV; 4Y14) and ligands, molecular docking, and visualization. The pharmacokinetic profiles are predictable by using the Swiss ADME and toxicity estimates by Toxtree. The results showed that cucurbitacin B, cucurbitacin E, oleanolic acid, catechin, ferulic acid and apigenin are the most potential compounds to interact with the macromolecular with a binding energy response similar to the native ligand. Pharmacokinetic predictions show that cucurbitacin B and cucurbitacin E deviate from one Lipinski rule (BM> 500), do not diffuse into the blood brain barrier, are not CYP450 inhibitors, as well as classified as Pgp substrates. The prediction of toxicity indicates that all potential compounds are classified as high toxicity compounds with a risk of narcosis, except oleanolic acid and ferulic acid. These compounds are not genotoxic or non-genotoxic carcinogens.
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