Lamiophlomis rotata 的完整叶绿体基因组:比较基因组分析和系统发育分析。

Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis Pub Date : 2022-01-01 Epub Date: 2024-01-08
Ji Wang, Xing-Xing Mao, Yazhen Ma
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引用次数: 0

摘要

Lamiophlomis rotata 是唇形科 Lamiophlomis 属中的唯一物种,广泛分布于青藏高原的高原地区,具有显著的治疗功效。以前的研究已记录了该物种的许多化学成分和推测的系统发育关系。然而,有关轮叶黑藻基因组数据,特别是其叶绿体基因组数据的出版物却很少见。这种知识的匮乏阻碍了对其在唇形科中的系统发育位置的全面研究。在本研究中,我们全面分析了轮叶菌的质体基因组。该质体基因组长度为 151,837 碱基对(bp),GC 含量为 38.5%。在该基因组中,共鉴定出 135 个基因,包括 90 个蛋白质编码基因、37 个转运 RNA(tRNA)基因和 8 个核糖体 RNA(rRNA)基因。通过系统进化分析,阐明了 L. rotata 在唇形科中的分类地位,突出了 Lamiophlomis 属和 Phlomis 属之间的密切关系。值得注意的是,L. rotata 与其他 Phlomis 种类之间存在广泛的遗传变异。这项研究可为了解唇形科类群的系统发育关系提供重要启示。
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Complete chloroplast genome of Lamiophlomis rotata: comparative genome analysis and phylogenetic analysis.

Lamiophlomis rotata, the only species within the genus Lamiophlomis (family Labiatae), exhibits a broad geographical distribution in elevated highland areas in Qinghai-Tibetan Plateau and possesses significant therapeutic properties. Numerous chemical compositions and putative phylogenetic affiliations of this species have been documented in prior research. Nevertheless, there is a scarcity of accessible publications regarding the genomic data of L. rotata, particularly its chloroplast genome. This dearth of knowledge hampers the comprehensive investigation of its phylogenetic placement within the Labiatae family. In this study, we present a comprehensive analysis of the plastid genome of L. rotata. The plastid genome has a length of 151,837 base pairs (bp) and a GC content of 38.5%. Within this genome, a total of 135 genes were identified, including 90 protein-coding genes, 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. By employing phylogenetic analysis, the taxonomic position of L. rotata within the family Labiatae is elucidated, highlighting a close relationship between the genus Lamiophlomis and the genus Phlomis. Notably, extensive genetic variations were uncovered between L. rotata and other Phlomis species. This study could provide significant insights for understanding the phylogenetic relationships of taxa within Labiatae.

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