球蛋白系统发育、进化和功能的最新进展。

IF 4.3 3区 材料科学 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC ACS Applied Electronic Materials Pub Date : 2024-06-01 Epub Date: 2024-01-09 DOI:10.1002/prot.26659
Claudio David Schuster, Franco Salvatore, Luc Moens, Marcelo Adrián Martí
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引用次数: 0

摘要

我们的球蛋白普查更新使我们能够在目前公认的生命树背景下,完善我们对球蛋白起源、进化和结构与功能关系的认识。在生命王国(细菌、古生菌、真核生物)多样化之前,现代球蛋白结构域起源于单结构域、3-over-3 α-螺旋折叠结构。随着原核生物的多样化,出现了三个单系球蛋白家族(M、S 和 T),很可能出现在变形菌和放线菌中,它们具有特定的序列和结构特征,并通过纵向和横向基因转移传播,很可能在最后一个普遍共同祖先(LUCA)中就已存在。非球蛋白结构域不断增加,最终又不断消失,从而在 M-(FHb 和 Adgb)和绝大多数 S-球蛋白的关键分支中形成了多结构域结构,这些球蛋白具有共同进化的多结构域结构,主要具有 "传感器 "功能。单结构域 T-家族球蛋白分化为四个主要群体,很可能具有与活性氮和氧物种(RNOS)化学以及氧储存/运输有关的功能,这推动了其主要分支的进化,这些分支具有特征性的关键远端残基(B10、E11、E7 和 G8)。M 家族的进化也导致了独特的主要类型(FHb 和 Fgb、Ngb、Adgb、GbX 脊椎动物 Gbs),并显示出从微生物中可能与 RNOS 化学有关的 TyrB10-Gln/AsnE11 控制的高氧亲和力,到多细胞动物中由疏水性 B10/E11-HisE7 控制的中等氧亲和力储存/运输功能的转变。
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Globin phylogeny, evolution and function, the newest update.

Our globin census update allows us to refine our vision of globin origin, evolution, and structure to function relationship in the context of the currently accepted tree of life. The modern globin domain originates as a single domain, three-over-three α-helical folded structure before the diversification of the kingdoms of life (Bacteria, Archaea, Eukarya). Together with the diversification of prokaryotes, three monophyletic globin families (M, S, and T) emerged, most likely in Proteobacteria and Actinobacteria, displaying specific sequence and structural features, and spread by vertical and horizontal gene transfer, most probably already present in the last universal common ancestor (LUCA). Non-globin domains were added, and eventually lost again, creating multi-domain structures in key branches of M- (FHb and Adgb) and the vast majority of S globins, which with their coevolved multi-domain architectures, have predominantly "sensor" functions. Single domain T-family globins diverged into four major groups and most likely display functions related to reactive nitrogen and oxygen species (RNOS) chemistry, as well as oxygen storage/transport which drives the evolution of its major branches with their characteristic key distal residues (B10, E11, E7, and G8). M-family evolution also lead to distinctive major types (FHb and Fgb, Ngb, Adgb, GbX vertebrate Gbs), and shows the shift from high oxygen affinity controlled by TyrB10-Gln/AsnE11 likely related to RNOS chemistry in microorganisms, to a moderate oxygen affinity storage/transport function controlled by hydrophobic B10/E11-HisE7 in multicellular animals.

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