基于生物信息学的脐带间充质干细胞对老化视网膜影响的研究。

Ya-Hui Shi, Jun-Qi Li, Min-Xu, Yu-Ying Wang, Ting-Hua Wang, Zhong-Fu Zuo, Xue-Zheng Liu
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引用次数: 0

摘要

背景:视网膜老化是人口老龄化引起的常见公共卫生问题之一,已成为成年人后天视力丧失的重要原因。本研究的目的是确定人脐带间充质干细胞(hUCMSCs)在延缓视网膜神经节细胞(RGC)衰老中的作用,以及所涉及的部分分子机制网络:方法:在体外建立视网膜神经节细胞衰老模型,并用 UCMSC 处理。方法:在体外建立视网膜神经节细胞衰老模型,并用 UCMSC 治疗。使用 CCK8 细胞活力和 Annexin V-PI 细胞凋亡染色法证明了间充质干细胞对衰老的改善作用。RGC、间充质干细胞和衰老的相关靶点主要是通过检索 GeneCards 数据库获得的。利用String数据库和Cytoscape构建了相关靶标之间的蛋白质相互作用网络,并根据MCC算法计算出10个关键靶基因,在此基础上进行了基因本体(GO)富集和京都基因组百科全书(KEGG)富集。结果:β-半乳糖苷酶染色显示,UCMSC 显著降低了 RGC 的阳性结果。视网膜老化过程得到缓解。生物信息学筛选出 201 个共享基因。通过 MCC 算法筛选出 10 个关键基因,包括血管内皮生长因子 A(VEGFA)、甘油醛-3-磷酸脱氢酶(GAPDH)、白蛋白(ALB)、白细胞介素 6(IL6)、肿瘤坏死因子(TNF)、肿瘤蛋白 P53(TP53)、胰岛素(INS)、基质金属蛋白酶 9 (MMP9)、表皮生长因子 (EGF)、白细胞介素-1β (IL1B),并富集了参与氧化应激和炎症相关途径的生物过程的相关转移酶活性和激酶活性。此外,PCR 结果显示,上述所有分子在 UCMSC 参与后都发生了表达变化:本实验证明了 UCMSC 在延缓视网膜神经节细胞衰老中的作用,并进一步阐明了 UCMSC 在延缓视网膜衰老中可能与 VEGFA、TP53、ALB、GAPDH、IL6、IL1B、MMP9 基因的激活以及 INS、EGF 和 TNF 的抑制有关。
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Bioinformatics-based Study on the Effects of Umbilical Cord Mesenchymal Stem Cells on the Aging Retina.

Background: Retinal aging is one of the common public health problems caused by population aging and has become an important cause of acquired vision loss in adults. The aim of this study was to determine the role of human umbilical cord mesenchymal stem cells (hUCMSCs) in delaying retinal ganglion cell (RGC) aging and part of the network of molecular mechanisms involved.

Methods: A retinal ganglion cell senescence model was established in vitro and treated with UCMSC. Successful establishment of the senescence system was demonstrated using β- galactosidase staining. The ameliorative effect of MSC on senescence was demonstrated using CCK8 cell viability and Annexin V-PI apoptosis staining. The relevant targets of RGC, MSC, and senescence were mainly obtained by searching the GeneCards database. The protein interaction network among the relevant targets was constructed using the String database and Cytoscape, and 10 key target genes were calculated based on the MCC algorithm, based on which Gene ontologies (GO) enrichment and the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment were performed. Changes in relevant target genes were detected using real-time fluorescence quantitative PCR and the mechanism of action of UCMSC was determined by RNA interference.

Results: β-galactosidase staining showed that UCMSC significantly reduced the positive results of RGC. The retinal aging process was alleviated. The bioinformatics screen yielded 201 shared genes. 10 key genes were selected by the MCC algorithm, including vascular endothelial growth factor A (VEGFA), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), albumin (ALB), interleukin- 6 (IL6), tumor necrosis factor (TNF), tumor protein P53 (TP53), insulin (INS), matrix metalloproteinase 9 (MMP9), epidermal growth factor (EGF), interleukin-1β (IL1B), and enrichment to related transferase activity and kinase activity regulated biological processes involved in oxidative stress and inflammation related pathways. In addition, PCR results showed that all the above molecules were altered in expression after UCMSC involvement.

Conclusion: This experiment demonstrated the role of UCMSC in delaying retinal ganglion cell senescence and further elucidated that UCMSC may be associated with the activation of VEGFA, TP53, ALB, GAPDH, IL6, IL1B, MMP9 genes and the inhibition of INS, EGF, and TNF in delaying retinal senescence.

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