不可逆动力学中过渡路径的元动力学

Tobias Grafke, Alessandro Laio
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摘要

多尺度建模与仿真》,第 22 卷第 1 期,第 125-141 页,2024 年 3 月。 摘要随机系统经常表现出多种可行的长期可变状态。在很长的时间尺度上,波动可能会推动系统在这些状态之间转换,从而极大地改变其宏观构型。在现实系统中,这些转换可能通过多种物理机制发生,对应于一对状态的多个不同转换通道。在本文中,我们利用过渡路径集合等同于路径空间中梯度流的不变度量这一事实,通过元动力学对其进行有效采样。我们证明了这种以前仅限于可逆分子动力学的路径空间元动力学实际上如何非常普遍地适用于包括不可逆和时间依赖性系统在内的可陨随机系统,并能严格估计相互竞争的过渡路径的相对概率。我们在研究描述存在平流的磁场反转的随机偏微分方程时展示了这种方法。
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Metadynamics for Transition Paths in Irreversible Dynamics
Multiscale Modeling &Simulation, Volume 22, Issue 1, Page 125-141, March 2024.
Abstract. Stochastic systems often exhibit multiple viable metastable states that are long-lived. Over very long timescales, fluctuations may push the system to transition between them, drastically changing its macroscopic configuration. In realistic systems, these transitions can happen via multiple physical mechanisms, corresponding to multiple distinct transition channels for a pair of states. In this paper, we use the fact that the transition path ensemble is equivalent to the invariant measure of a gradient flow in pathspace, which can be efficiently sampled via metadynamics. We demonstrate how this pathspace metadynamics, previously restricted to reversible molecular dynamics, is in fact very generally applicable to metastable stochastic systems, including irreversible and time-dependent ones, and allows rigorous estimation of the relative probability of competing transition paths. We showcase this approach on the study of a stochastic partial differential equation describing magnetic field reversal in the presence of advection.
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