João Santinha, Vasileios Katsaros, George Stranjalis, Evangelia Liouta, Christos Boskos, Celso Matos, Catarina Viegas, Nickolas Papanikolaou
{"title":"基于端到端人工智能的 MRI 图像分析系统的开发,用于预测胶质瘤患者的 IDH 突变状态:多中心验证","authors":"João Santinha, Vasileios Katsaros, George Stranjalis, Evangelia Liouta, Christos Boskos, Celso Matos, Catarina Viegas, Nickolas Papanikolaou","doi":"10.1007/s10278-023-00918-6","DOIUrl":null,"url":null,"abstract":"<p>Radiogenomics has shown potential to predict genomic phenotypes from medical images. The development of models using standard-of-care pre-operative MRI images, as opposed to advanced MRI images, enables a broader reach of such models. In this work, a radiogenomics model for IDH mutation status prediction from standard-of-care MRIs in patients with glioma was developed and validated using multicentric data. A cohort of 142 (wild-type: 32.4%) patients with glioma retrieved from the TCIA/TCGA was used to train a logistic regression model to predict the IDH mutation status. The model was evaluated using retrospective data collected in two distinct hospitals, comprising 36 (wild-type: 63.9%) and 53 (wild-type: 75.5%) patients. Model development utilized ROC analysis. Model discrimination and calibration were used for validation. The model yielded an AUC of 0.741 vs. 0.716 vs. 0.938, a sensitivity of 0.784 vs. 0.739 vs. 0.875, and a specificity of 0.657 vs. 0.692 vs. 1.000 on the training, test cohort 1, and test cohort 2, respectively. The assessment of model fairness suggested an unbiased model for age and sex, and calibration tests showed a <i>p</i> < 0.05. These results indicate that the developed model allows the prediction of the IDH mutation status in gliomas using standard-of-care MRI images and does not appear to hold sex and age biases.</p>","PeriodicalId":50214,"journal":{"name":"Journal of Digital Imaging","volume":"235 1","pages":""},"PeriodicalIF":2.9000,"publicationDate":"2024-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Development of End-to-End AI–Based MRI Image Analysis System for Predicting IDH Mutation Status of Patients with Gliomas: Multicentric Validation\",\"authors\":\"João Santinha, Vasileios Katsaros, George Stranjalis, Evangelia Liouta, Christos Boskos, Celso Matos, Catarina Viegas, Nickolas Papanikolaou\",\"doi\":\"10.1007/s10278-023-00918-6\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Radiogenomics has shown potential to predict genomic phenotypes from medical images. The development of models using standard-of-care pre-operative MRI images, as opposed to advanced MRI images, enables a broader reach of such models. In this work, a radiogenomics model for IDH mutation status prediction from standard-of-care MRIs in patients with glioma was developed and validated using multicentric data. A cohort of 142 (wild-type: 32.4%) patients with glioma retrieved from the TCIA/TCGA was used to train a logistic regression model to predict the IDH mutation status. The model was evaluated using retrospective data collected in two distinct hospitals, comprising 36 (wild-type: 63.9%) and 53 (wild-type: 75.5%) patients. Model development utilized ROC analysis. Model discrimination and calibration were used for validation. The model yielded an AUC of 0.741 vs. 0.716 vs. 0.938, a sensitivity of 0.784 vs. 0.739 vs. 0.875, and a specificity of 0.657 vs. 0.692 vs. 1.000 on the training, test cohort 1, and test cohort 2, respectively. The assessment of model fairness suggested an unbiased model for age and sex, and calibration tests showed a <i>p</i> < 0.05. These results indicate that the developed model allows the prediction of the IDH mutation status in gliomas using standard-of-care MRI images and does not appear to hold sex and age biases.</p>\",\"PeriodicalId\":50214,\"journal\":{\"name\":\"Journal of Digital Imaging\",\"volume\":\"235 1\",\"pages\":\"\"},\"PeriodicalIF\":2.9000,\"publicationDate\":\"2024-01-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Digital Imaging\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1007/s10278-023-00918-6\",\"RegionNum\":2,\"RegionCategory\":\"工程技术\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Digital Imaging","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1007/s10278-023-00918-6","RegionNum":2,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING","Score":null,"Total":0}
引用次数: 0
摘要
放射基因组学已显示出从医学图像预测基因组表型的潜力。相对于先进的核磁共振成像图像,使用标准护理术前核磁共振成像图像开发模型能使此类模型的应用范围更广。在这项研究中,利用多中心数据开发并验证了一个放射基因组学模型,用于从胶质瘤患者的标准护理 MRI 图像预测 IDH 突变状态。从TCIA/TCGA检索到的142例胶质瘤患者(野生型:32.4%)的队列被用来训练一个逻辑回归模型,以预测IDH突变状态。该模型利用在两家不同医院收集的回顾性数据进行了评估,这两家医院分别有 36 名(野生型:63.9%)和 53 名(野生型:75.5%)患者。模型开发采用了 ROC 分析法。模型鉴别和校准用于验证。模型在训练、测试队列 1 和测试队列 2 中的 AUC 分别为 0.741 vs. 0.716 vs. 0.938,灵敏度为 0.784 vs. 0.739 vs. 0.875,特异度为 0.657 vs. 0.692 vs. 1.000。对模型公平性的评估表明,年龄和性别模型无偏见,校准测试显示 p < 0.05。这些结果表明,所开发的模型可以利用标准磁共振成像图像预测胶质瘤的 IDH 突变状态,而且似乎不存在性别和年龄偏差。
Development of End-to-End AI–Based MRI Image Analysis System for Predicting IDH Mutation Status of Patients with Gliomas: Multicentric Validation
Radiogenomics has shown potential to predict genomic phenotypes from medical images. The development of models using standard-of-care pre-operative MRI images, as opposed to advanced MRI images, enables a broader reach of such models. In this work, a radiogenomics model for IDH mutation status prediction from standard-of-care MRIs in patients with glioma was developed and validated using multicentric data. A cohort of 142 (wild-type: 32.4%) patients with glioma retrieved from the TCIA/TCGA was used to train a logistic regression model to predict the IDH mutation status. The model was evaluated using retrospective data collected in two distinct hospitals, comprising 36 (wild-type: 63.9%) and 53 (wild-type: 75.5%) patients. Model development utilized ROC analysis. Model discrimination and calibration were used for validation. The model yielded an AUC of 0.741 vs. 0.716 vs. 0.938, a sensitivity of 0.784 vs. 0.739 vs. 0.875, and a specificity of 0.657 vs. 0.692 vs. 1.000 on the training, test cohort 1, and test cohort 2, respectively. The assessment of model fairness suggested an unbiased model for age and sex, and calibration tests showed a p < 0.05. These results indicate that the developed model allows the prediction of the IDH mutation status in gliomas using standard-of-care MRI images and does not appear to hold sex and age biases.
期刊介绍:
The Journal of Digital Imaging (JDI) is the official peer-reviewed journal of the Society for Imaging Informatics in Medicine (SIIM). JDI’s goal is to enhance the exchange of knowledge encompassed by the general topic of Imaging Informatics in Medicine such as research and practice in clinical, engineering, and information technologies and techniques in all medical imaging environments. JDI topics are of interest to researchers, developers, educators, physicians, and imaging informatics professionals.
Suggested Topics
PACS and component systems; imaging informatics for the enterprise; image-enabled electronic medical records; RIS and HIS; digital image acquisition; image processing; image data compression; 3D, visualization, and multimedia; speech recognition; computer-aided diagnosis; facilities design; imaging vocabularies and ontologies; Transforming the Radiological Interpretation Process (TRIP™); DICOM and other standards; workflow and process modeling and simulation; quality assurance; archive integrity and security; teleradiology; digital mammography; and radiological informatics education.