{"title":"统一 13 C 和/或 15 N 标记的高分子量非硫酸化软骨素的核磁共振特征。","authors":"Megumi Ichikawa, Yuya Otsuka, Toshikazu Minamisawa, Noriyoshi Manabe, Yoshiki Yamaguchi","doi":"10.1002/mrc.5426","DOIUrl":null,"url":null,"abstract":"<p>Solution nuclear magnetic resonance (NMR) analysis of polysaccharides can provide valuable information not only on their primary structures but also on their conformation, dynamics, and interactions under physiological conditions. One of the main problems is that non-anomeric <sup>1</sup>H signals typically overlap, and this often hinders detailed NMR analysis. Isotope enrichment, such as with <sup>13</sup>C and <sup>15</sup>N, will add a new dimension to the NMR spectra of polysaccharides, and spectral analysis can be performed with enhanced sensitivity using isolated peaks. For this purpose, here we have prepared uniformly <sup>13</sup>C- and/or <sup>15</sup>N-labeled chondroitin polysaccharides –4)-β-D-glucuronopyranosyl-(1–3)-2-acetamido-2-deoxy-β-D-galactopyranosyl-(1– with molecular weights in the range from 310 to 460 k by bacterial fermentation. The enrichment ratios for <sup>13</sup>C and <sup>15</sup>N were 98.9 and 99.8%, respectively, based on the mass spectrometric analysis of the constituent chondroitin disaccharides. <sup>1</sup>H and <sup>13</sup>C NMR signals were assigned mainly based on HSQC and <sup>13</sup>C-detection experiments including INADEQUATE, HETCOR, and HETCOR-TOCSY. The carbonyl carbon signal of the <i>N</i>-acetyl-β-D-galactosamine residue was unambiguously distinguished from the C6 carbon of the β-D-glucuronic acid residue by the observation of <sup>13</sup>C peak splitting due to <sup>1</sup><i>J</i><sub>CN</sub> coupling in <sup>13</sup>C- and <sup>15</sup>N-labeled chondroitin. The <i>T</i><sub>2</sub>* and <i>T</i><sub>1</sub> were measured and indicate that both rigid and mobile sites are present in the long sequence of chondroitin. The conformation, dynamics, and interactions of chondroitin and its derivatives will be further analyzed based on the results obtained in this study.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":1.9000,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"NMR characterization of uniformly 13C- and/or 15N-labeled, unsulfated chondroitins with high molecular weights\",\"authors\":\"Megumi Ichikawa, Yuya Otsuka, Toshikazu Minamisawa, Noriyoshi Manabe, Yoshiki Yamaguchi\",\"doi\":\"10.1002/mrc.5426\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Solution nuclear magnetic resonance (NMR) analysis of polysaccharides can provide valuable information not only on their primary structures but also on their conformation, dynamics, and interactions under physiological conditions. One of the main problems is that non-anomeric <sup>1</sup>H signals typically overlap, and this often hinders detailed NMR analysis. Isotope enrichment, such as with <sup>13</sup>C and <sup>15</sup>N, will add a new dimension to the NMR spectra of polysaccharides, and spectral analysis can be performed with enhanced sensitivity using isolated peaks. For this purpose, here we have prepared uniformly <sup>13</sup>C- and/or <sup>15</sup>N-labeled chondroitin polysaccharides –4)-β-D-glucuronopyranosyl-(1–3)-2-acetamido-2-deoxy-β-D-galactopyranosyl-(1– with molecular weights in the range from 310 to 460 k by bacterial fermentation. The enrichment ratios for <sup>13</sup>C and <sup>15</sup>N were 98.9 and 99.8%, respectively, based on the mass spectrometric analysis of the constituent chondroitin disaccharides. <sup>1</sup>H and <sup>13</sup>C NMR signals were assigned mainly based on HSQC and <sup>13</sup>C-detection experiments including INADEQUATE, HETCOR, and HETCOR-TOCSY. The carbonyl carbon signal of the <i>N</i>-acetyl-β-D-galactosamine residue was unambiguously distinguished from the C6 carbon of the β-D-glucuronic acid residue by the observation of <sup>13</sup>C peak splitting due to <sup>1</sup><i>J</i><sub>CN</sub> coupling in <sup>13</sup>C- and <sup>15</sup>N-labeled chondroitin. The <i>T</i><sub>2</sub>* and <i>T</i><sub>1</sub> were measured and indicate that both rigid and mobile sites are present in the long sequence of chondroitin. The conformation, dynamics, and interactions of chondroitin and its derivatives will be further analyzed based on the results obtained in this study.</p>\",\"PeriodicalId\":18142,\"journal\":{\"name\":\"Magnetic Resonance in Chemistry\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2024-01-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Magnetic Resonance in Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/mrc.5426\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Magnetic Resonance in Chemistry","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/mrc.5426","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
摘要
多糖的溶液核磁共振(NMR)分析不仅能提供有关多糖一级结构的宝贵信息,还能提供有关多糖在生理条件下的构象、动力学和相互作用的宝贵信息。主要问题之一是非同分异构体的 1 H 信号通常会重叠,这往往会妨碍详细的 NMR 分析。同位素富集(如 13 C 和 15 N)将为多糖的 NMR 图谱增添新的维度,利用分离峰可提高光谱分析的灵敏度。为此,我们通过细菌发酵制备了分子量在 310 至 460 k 范围内的 13 C 和/或 15 N 标记的软骨素多糖-4)-β-D-吡喃葡萄糖基-(1-3)-2-乙酰氨基-2-脱氧-β-D-吡喃半乳糖基-(1-)。根据对组成软骨素二糖的质谱分析,13 C 和 15 N 的富集率分别为 98.9% 和 99.8%。1 H 和 13 C NMR 信号的分配主要基于 HSQC 和 13 C 检测实验,包括 INADEQUATE、HETCOR 和 HETCOR-TOCSY。通过观察 13 C 和 15 N 标记软骨素中 1 JCN 耦合导致的 13 C 峰分裂,可以明确区分 N-乙酰基-β-D-半乳糖胺残基的羰基碳信号和 β-D- 葡糖醛酸残基的 C6 碳信号。对 T2 * 和 T1 的测量表明,软骨素的长序列中既有刚性位点,也有移动位点。根据本研究的结果,我们将进一步分析软骨素及其衍生物的构象、动力学和相互作用。
NMR characterization of uniformly 13C- and/or 15N-labeled, unsulfated chondroitins with high molecular weights
Solution nuclear magnetic resonance (NMR) analysis of polysaccharides can provide valuable information not only on their primary structures but also on their conformation, dynamics, and interactions under physiological conditions. One of the main problems is that non-anomeric 1H signals typically overlap, and this often hinders detailed NMR analysis. Isotope enrichment, such as with 13C and 15N, will add a new dimension to the NMR spectra of polysaccharides, and spectral analysis can be performed with enhanced sensitivity using isolated peaks. For this purpose, here we have prepared uniformly 13C- and/or 15N-labeled chondroitin polysaccharides –4)-β-D-glucuronopyranosyl-(1–3)-2-acetamido-2-deoxy-β-D-galactopyranosyl-(1– with molecular weights in the range from 310 to 460 k by bacterial fermentation. The enrichment ratios for 13C and 15N were 98.9 and 99.8%, respectively, based on the mass spectrometric analysis of the constituent chondroitin disaccharides. 1H and 13C NMR signals were assigned mainly based on HSQC and 13C-detection experiments including INADEQUATE, HETCOR, and HETCOR-TOCSY. The carbonyl carbon signal of the N-acetyl-β-D-galactosamine residue was unambiguously distinguished from the C6 carbon of the β-D-glucuronic acid residue by the observation of 13C peak splitting due to 1JCN coupling in 13C- and 15N-labeled chondroitin. The T2* and T1 were measured and indicate that both rigid and mobile sites are present in the long sequence of chondroitin. The conformation, dynamics, and interactions of chondroitin and its derivatives will be further analyzed based on the results obtained in this study.
期刊介绍:
MRC is devoted to the rapid publication of papers which are concerned with the development of magnetic resonance techniques, or in which the application of such techniques plays a pivotal part. Contributions from scientists working in all areas of NMR, ESR and NQR are invited, and papers describing applications in all branches of chemistry, structural biology and materials chemistry are published.
The journal is of particular interest not only to scientists working in academic research, but also those working in commercial organisations who need to keep up-to-date with the latest practical applications of magnetic resonance techniques.