开发和验证病理组学模型,利用机器学习预测头颈癌中 CXCL8 的表达和预后。

IF 2.9 3区 医学 Q1 OTORHINOLARYNGOLOGY Clinical and Experimental Otorhinolaryngology Pub Date : 2024-02-01 Epub Date: 2024-01-22 DOI:10.21053/ceo.2023.00026
Weihua Wang, Suyu Ruan, Yuhang Xie, Shengjian Fang, Junxian Yang, Xueyan Li, Yu Zhang
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引用次数: 0

摘要

目的:为头颈部鳞状细胞癌(HNSCC)患者的个性化医疗寻找新的生物标志物,研究一种预后指示方法势在必行。最近出现了基于定量医学影像分析的病理组学。CXCL8是一种重要的炎性细胞因子,可反映总生存率(OS)。本研究旨在探讨CXCL8 mRNA表达与病理特征的关联,并研究CXCL8的潜在生物学特性:方法:从TCGA TCGA- HNSCC数据集中获取临床信息和TPM(每百万转录本)mRNA测序数据。采用Kaplan Kaplan-Meier生存曲线确定CXCL8 mRNA表达与患者生存率之间的相关性。我们回顾性分析了TCGA数据库中确诊的313例HNSCC样本。从HE图像中提取病理组学特征,然后使用mRMR_RFE方法和逻辑回归(LR)算法进行筛选:结果:根据Kaplan Kaplan-Meier曲线,CXCL8的高表达与OS恶化有显著相关性。LR病理组学模型在训练集中整合了mRMR_RFE方法识别出的16个放射组学特征,在测试集中表现良好。校准图显示,病理组学模型预测的高基因表达概率与实际观察结果相当吻合。该模型具有较高的临床实用性:结论:CXCL8 mRNA表达所反映的病理组学模型是预测HNSCC患者预后的有效工具,可辅助临床决策。CXCL8的高表达可能有助于减少DNA损伤,并与促炎微环境相关联,为肿瘤治疗提供了潜在靶点。
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Development and Validation of a Pathomics Model Using Machine Learning to Predict CXCL8 Expression and Prognosis in Head and Neck Cancer.

Objectives: The necessity to develop a method for prognostication and to identify novel biomarkers for personalized medicine in patients with head and neck squamous cell carcinoma (HNSCC) cannot be overstated. Recently, pathomics, which relies on quantitative analysis of medical imaging, has come to the forefront. CXCL8, an essential inflammatory cytokine, has been shown to correlate with overall survival (OS). This study examined the relationship between CXCL8 mRNA expression and pathomics features and aimed to explore the biological underpinnings of CXCL8.

Methods: Clinical information and transcripts per million mRNA sequencing data were obtained from The Cancer Genome Atlas (TCGA)-HNSCC dataset. We identified correlations between CXCL8 mRNA expression and patient survival rates using a Kaplan-Meier survival curve. A retrospective analysis of 313 samples diagnosed with HNSCC in the TCGA database was conducted. Pathomics features were extracted from hematoxylin and eosin-stained images, and then the minimum redundancy maximum relevance, with recursive feature elimination (mRMR-RFE) method was applied, followed by screening with the logistic regression algorithm.

Results: Kaplan-Meier curves indicated that high expression of CXCL8 was significantly associated with decreased OS. The logistic regression pathomics model incorporated 16 radiomics features identified by the mRMR-RFE method in the training set and demonstrated strong performance in the testing set. Calibration plots showed that the probability of high gene expression predicted by the pathomics model was in good agreement with actual observations, suggesting the model's high clinical applicability.

Conclusion: The pathomics model of CXCL8 mRNA expression serves as an effective tool for predicting prognosis in patients with HNSCC and can aid in clinical decision-making. Elevated levels of CXCL8 expression may lead to reduced DNA damage and are associated with a pro-inflammatory tumor microenvironment, offering a potential therapeutic target.

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来源期刊
CiteScore
4.90
自引率
6.70%
发文量
49
审稿时长
6-12 weeks
期刊介绍: Clinical and Experimental Otorhinolaryngology (Clin Exp Otorhinolaryngol, CEO) is an international peer-reviewed journal on recent developments in diagnosis and treatment of otorhinolaryngology-head and neck surgery and dedicated to the advancement of patient care in ear, nose, throat, head, and neck disorders. This journal publishes original articles relating to both clinical and basic researches, reviews, and clinical trials, encompassing the whole topics of otorhinolaryngology-head and neck surgery. CEO was first issued in 2008 and this journal is published in English four times (the last day of February, May, August, and November) per year by the Korean Society of Otorhinolaryngology-Head and Neck Surgery. The Journal aims at publishing evidence-based, scientifically written articles from different disciplines of otorhinolaryngology field. The readership contains clinical/basic research into current practice in otorhinolaryngology, audiology, speech pathology, head and neck oncology, plastic and reconstructive surgery. The readers are otolaryngologists, head and neck surgeons and oncologists, audiologists, and speech pathologists.
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