对濒危白耳夜鹭(Gorsachius magnificus)基因组的深入研究。

IF 1.9 Q3 GENETICS & HEREDITY BMC genomic data Pub Date : 2024-01-30 DOI:10.1186/s12863-024-01194-1
Haoran Luo, Qingxian Lin, Wenzhen Fang, Xiaolin Chen, Xiaoping Zhou
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引用次数: 0

摘要

目的:濒危物种的基因组序列可提供宝贵的遗传信息,对改进保护策略非常重要。白耳夜鹭(Gorsachius magnificus)是一种濒危且鲜为人知的旱禽。为了支持未来对该物种的保护遗传学和进化适应性的研究,我们报告了白耳夜鹭全新组装和注释的全基因组序列:G. magnificus基因组组装的最终草案大小为1.19 Gb,等位基因N50为187.69 kb,支架N50为7,338.28 kb。根据 BUSCO 分析,基因组组装包含了 Aves (odb10) 数据集中 8,338 个基因的 97.49%。约有 10.52% 的基因组由重复序列组成。该基因组共预测出 14,613 个编码蛋白质的基因,并为 14,611 个基因提供了功能注释。基因组组装的杂合率为每千基对 0.49 个杂合。该巨蜥基因组草案为今后的保护和进化研究提供了宝贵的基因组资源。
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Genomic insights into the endangered white-eared night heron (Gorsachius magnificus).

Objectives: A genome sequence of a threatened species can provide valuable genetic information that is important for improving the conservation strategies. The white-eared night heron (Gorsachius magnificus) is an endangered and poorly known ardeid bird. In order to support future studies on conservation genetics and evolutionary adaptation of this species, we have reported a de novo assembled and annotated whole-genome sequence of the G. magnificus.

Data description: The final draft genome assembly of the G. magnificus was 1.19 Gb in size, with a contig N50 of 187.69 kb and a scaffold N50 of 7,338.28 kb. According to BUSCO analysis, the genome assembly contained 97.49% of the 8,338 genes in the Aves (odb10) dataset. Approximately 10.52% of the genome assembly was composed of repetitive sequences. A total of 14,613 protein-coding genes were predicted in the genome assembly, with functional annotations available for 14,611 genes. The genome assembly exhibited a heterozygosity rate of 0.49 heterozygosity per kilobase pair. This draft genome of G. magnificus provides valuable genomic resources for future studies on conservation and evolution.

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