基于废水的流行病学在建筑物层面的应用揭示了基于贡献者年龄的不同病毒组特征

IF 3.8 3区 医学 Q2 GENETICS & HEREDITY Human Genomics Pub Date : 2024-02-01 DOI:10.1186/s40246-024-00580-1
Cristina Mejías-Molina, Anna Pico-Tomàs, Sandra Martínez-Puchol, Marta Itarte, Helena Torrell, Núria Canela, Carles M. Borrego, Lluís Corominas, Marta Rusiñol, Sílvia Bofill-Mas
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引用次数: 0

摘要

在废水中可以检测到释放到环境中的人类病毒,并对其进行定性。对废水病毒组的研究为了解病毒在人群中的传播情况提供了一个综合视角。由于病毒感染的发生率和严重程度会在人的一生中发生变化,因此研究不同人口群体提供的废水样本中的病毒组可以为了解这些群体中病毒感染的流行情况提供有价值的信息。在我们的研究中,我们采用了靶向富集测序技术,以建筑物为单位描述废水中人类病毒群的特征。这是通过对加泰罗尼亚两座城市的学校、大学和养老院的废水进行被动采样实现的。此外,还分析了来自一个大型城市污水处理厂的污水,作为研究人类病毒群集体排泄的参考。从污水处理厂的进水样本中获得的病毒组显示了不同年龄段人群的病毒综合存在情况,其中以星状病毒和人类波卡病毒最为普遍,其次是人类腺病毒、多瘤病毒和乳头瘤病毒。在所研究的不同类型的建筑物中,病毒特征存在显著差异。学校样本中主要是乳突病毒 1,大学环境中主要是唾液病毒和人类多瘤病毒 JC 和 BK,而疗养院中的病毒家族分布更为均衡,主要是乳头瘤病毒和短小病毒,有趣的是,还有一些与免疫抑制有关的病毒。这项研究表明,基于建筑物废水的流行病学是监测特定年龄组中病毒流行情况的有效工具。它为公共卫生监测和流行病学研究提供了宝贵的见解。
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Wastewater-based epidemiology applied at the building-level reveals distinct virome profiles based on the age of the contributing individuals
Human viruses released into the environment can be detected and characterized in wastewater. The study of wastewater virome offers a consolidated perspective on the circulation of viruses within a population. Because the occurrence and severity of viral infections can vary across a person’s lifetime, studying the virome in wastewater samples contributed by various demographic segments can provide valuable insights into the prevalence of viral infections within these segments. In our study, targeted enrichment sequencing was employed to characterize the human virome in wastewater at a building-level scale. This was accomplished through passive sampling of wastewater in schools, university settings, and nursing homes in two cities in Catalonia. Additionally, sewage from a large urban wastewater treatment plant was analysed to serve as a reference for examining the collective excreted human virome. The virome obtained from influent wastewater treatment plant samples showcased the combined viral presence from individuals of varying ages, with astroviruses and human bocaviruses being the most prevalent, followed by human adenoviruses, polyomaviruses, and papillomaviruses. Significant variations in the viral profiles were observed among the different types of buildings studied. Mamastrovirus 1 was predominant in school samples, salivirus and human polyomaviruses JC and BK in the university settings while nursing homes showed a more balanced distribution of viral families presenting papillomavirus and picornaviruses and, interestingly, some viruses linked to immunosuppression. This study shows the utility of building-level wastewater-based epidemiology as an effective tool for monitoring the presence of viruses circulating within specific age groups. It provides valuable insights for public health monitoring and epidemiological studies.
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来源期刊
Human Genomics
Human Genomics GENETICS & HEREDITY-
CiteScore
6.00
自引率
2.20%
发文量
55
审稿时长
11 weeks
期刊介绍: Human Genomics is a peer-reviewed, open access, online journal that focuses on the application of genomic analysis in all aspects of human health and disease, as well as genomic analysis of drug efficacy and safety, and comparative genomics. Topics covered by the journal include, but are not limited to: pharmacogenomics, genome-wide association studies, genome-wide sequencing, exome sequencing, next-generation deep-sequencing, functional genomics, epigenomics, translational genomics, expression profiling, proteomics, bioinformatics, animal models, statistical genetics, genetic epidemiology, human population genetics and comparative genomics.
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