利用生物信息学分析不同程度阿尔茨海默病的不同表达基因及其在疾病进展中的作用。

IF 2 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Journal of Applied Genetics Pub Date : 2024-02-05 DOI:10.1007/s13353-024-00827-6
Yanfang Niu, Yunyun Zhang, Qin Zha, Jingfei Shi, Qiuyan Weng
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引用次数: 0

摘要

这项研究采用生物信息学方法,利用 GEO 数据库中的 GSE28146 数据集,精确定位了阿尔茨海默病(AD)从萌芽期到严重期各个阶段的关键差异表达基因(DEG)。分析方法包括通过R语言中的limma软件包识别DEG,并通过clusterProfiler进行GO和KEGG通路分析,以辨别生物过程和通路参与。主要发现突出了蛋白酶体亚基 PSMB4、PSMB8、PSMC4 和 PSMD6 在早期,核糖体蛋白 RPS3 和 RPL11 在中度 AD 中,线粒体成分 COX5B、COX6B2 和 COX7A2 在重度 AD 中的作用,强调了它们在疾病发病机制中的重要性。最后,这些结果不仅描述了伴随渐冻人症进展的动态基因变化,还提出了潜在治疗靶点的关键生物标志物,为未来渐冻人症的研究和治疗开发提供了坚实的基础。这为分析渐冻人症的发病机制和发展过程以及研究靶向药物提供了一个新思路。
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Bioinformatics to analyze the differentially expressed genes in different degrees of Alzheimer's disease and their roles in progress of the disease.

Employing bioinformatics approaches, this investigation pinpointed pivotal differentially expressed genes (DEGs) across the spectrum of Alzheimer's disease (AD), from incipient to severe stages, using the GSE28146 dataset from the GEO repository. Analytical methods included DEG identification via the limma package in R, coupled with GO and KEGG pathway analyses through clusterProfiler, to discern biological processes and pathway involvements. Key findings spotlighted the roles of proteasome subunits PSMB4, PSMB8, PSMC4, and PSMD6 in the early stage, ribosomal proteins RPS3 and RPL11 during moderate AD, and mitochondrial components COX5B, COX6B2, and COX7A2 in severe AD, underscoring their importance in the disease's pathogenesis. Conclusively, these results not only delineate the dynamic genetic shifts accompanying AD progression but also propose critical biomarkers for potential therapeutic targeting, offering a consolidated basis for future AD research and treatment development. This offered a novel idea for analyzing the pathogenesis and development of AD and investigation of targeted drugs.

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来源期刊
Journal of Applied Genetics
Journal of Applied Genetics 生物-生物工程与应用微生物
CiteScore
4.30
自引率
4.20%
发文量
62
审稿时长
6-12 weeks
期刊介绍: The Journal of Applied Genetics is an international journal on genetics and genomics. It publishes peer-reviewed original papers, short communications (including case reports) and review articles focused on the research of applicative aspects of plant, human, animal and microbial genetics and genomics.
期刊最新文献
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