基于lncRNA的特征用于鉴别肝细胞癌的预后和进展。

IF 2 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Journal of Applied Genetics Pub Date : 2024-05-01 Epub Date: 2024-02-12 DOI:10.1007/s13353-024-00836-5
Huiyuan Qiu, Bo Jiang, Yinqi Chen, Zhaoyi Lin, Wenjie Zheng, Xiaolei Cao
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引用次数: 0

摘要

长非编码 RNA(lncRNA)与肝细胞癌(HCC)的发生和发展有关。本研究旨在确定一个用于预测 HCC 患者生存期的强健的 lncRNA 标志。我们对癌症基因组图谱(TCGA)-肝脏肝细胞癌数据库中的lncRNA表达谱进行了整合分析,以确定与HCC预后相关的lncRNA。HCC 队列被随机分为训练集(n = 250)和测试集(n = 113)。经过两步筛选,我们确定了18个lncRNA特征风险评分。在训练集中,高风险亚组的生存时间明显短于低风险组(P
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Featured lncRNA-based signature for discriminating prognosis and progression of hepatocellular carcinoma.

Long non-coding RNAs (lncRNAs) have been implicated in carcinogenesis and progression of hepatocellular carcinoma (HCC). This study aimed to identify a robust lncRNA signature for predicting the survival of HCC patients. We performed an integrated analysis of the lncRNA expression profiling in The Cancer Genome Atlas (TCGA)-liver hepatocellular carcinoma database to identify the prognosis-related lncRNA for the HCC. The HCC cohort was randomly divided into a training set (n = 250) and a testing set (n = 113). Following a two-step screening, we identified an 18-lncRNA signature risk score. The high-risk subgroups had significantly shorter survival time than the low-risk group in both the training set (P < 0.0001) and the testing set (P = 0.005). Stratification analysis revealed that the prognostic value of the lncRNA-based signature was independent of the tumor stage and pathologic stage. The area under the receiver operating characteristic curve (AUROC) of the 18-lncRNA signature risk score was 0.826 (95%CI, 0.764-0.888), 0.817 (95%CI, 0.759-0.876), and 0.799 (95%CI, 0.731-0.867) for 1-year, 3-year, and 5-year follow-up, respectively. Bioinformatics analyses indicated that the 18 lncRNA might mediate cell cycle, DNA replication processes, and canonical cancer-related pathways, in which MCM3AP-AS1 was a potential target for HCC. In conclusion, the 18-lncRNA signature was a robust predictive biomarker for the prognosis and progression of HCC.

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来源期刊
Journal of Applied Genetics
Journal of Applied Genetics 生物-生物工程与应用微生物
CiteScore
4.30
自引率
4.20%
发文量
62
审稿时长
6-12 weeks
期刊介绍: The Journal of Applied Genetics is an international journal on genetics and genomics. It publishes peer-reviewed original papers, short communications (including case reports) and review articles focused on the research of applicative aspects of plant, human, animal and microbial genetics and genomics.
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