从加拿大安大略省淡水中分离出的霍乱弧菌 NB-183 的全基因组序列具有独特的基因库。

IF 1.9 Q3 GENETICS & HEREDITY BMC genomic data Pub Date : 2024-02-15 DOI:10.1186/s12863-024-01204-2
Opeyemi U Lawal, Noah Bryan, Mitra Soni, Yanhong Chen, Melinda Precious, Valeria R Parreira, Lawrence Goodridge
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引用次数: 0

摘要

目的:霍乱弧菌是一种对全球健康构成重大威胁的肠道病原体。它会导致人类患上严重的脱水性腹泻病霍乱。霍乱弧菌可通过食用受污染的海产品或直接接触受污染的水域而感染。作为评估水生系统微生物群落概况的大型项目的一部分,霍乱弧菌菌株 NB-183 被分离出来,并采用培养和全基因组测序相结合的方法进行了鉴定:在此,我们报告了从加拿大安大略省一个休闲淡水湖中分离出的霍乱弧菌菌株 NB-183 的全基因组序列。基因组测序使用的是短线程 Illumina 系统。全基因组测序的基因组大小为 4,112,549 bp,有 99 个等位基因,平均基因组覆盖率为 96×,G + C 含量为 47.42%。基于全基因组的比较、系统发生组和基因重组表明,该菌株含有多个毒力基因和生物合成基因簇。本研究提供的基因组序列及其相关数据集将成为增进对霍乱弧菌功能、生态和进化动态了解的不可或缺的资源。
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Whole genome sequence of Vibrio cholerae NB-183 isolated from freshwater in Ontario, Canada harbors a unique gene repertoire.

Objective: Vibrio cholerae is an enteric pathogen that poses a significant threat to global health. It causes severe dehydrating diarrheal disease cholera in humans. V. cholerae could be acquired either from consuming contaminated seafood or direct contact with polluted waters. As part of a larger program that assesses the microbial community profile in aquatic systems, V. cholerae strain NB-183 was isolated and characterized using a combination of culture- and whole-genome sequencing-based approaches.

Data description: Here we report the assembled and annotated whole-genome sequence of a V. cholerae strain NB-183 isolated from a recreational freshwater lake in Ontario, Canada. The genome was sequenced using short-read Illumina systems. The whole-genome sequencing yielded 4,112,549 bp genome size with 99 contigs with an average genome coverage of 96× and 47.42% G + C content. The whole genome-based comparison, phylogenomic and gene repertoire indicates that this strain harbors multiple virulence genes and biosynthetic gene clusters. This genome sequence and its associated datasets provided in this study will be an indispensable resource to enhance the understanding of the functional, ecological, and evolutionary dynamics of V. cholerae.

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