[数字病理学中人工智能的模型可移植性:潜力与现实]。

Pathologie (Heidelberg, Germany) Pub Date : 2024-03-01 Epub Date: 2024-02-19 DOI:10.1007/s00292-024-01299-5
Robin S Mayer, Maximilian N Kinzler, Alexandra K Stoll, Steffen Gretser, Paul K Ziegler, Anna Saborowski, Henning Reis, Arndt Vogel, Peter J Wild, Nadine Flinner
{"title":"[数字病理学中人工智能的模型可移植性:潜力与现实]。","authors":"Robin S Mayer, Maximilian N Kinzler, Alexandra K Stoll, Steffen Gretser, Paul K Ziegler, Anna Saborowski, Henning Reis, Arndt Vogel, Peter J Wild, Nadine Flinner","doi":"10.1007/s00292-024-01299-5","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>Artificial intelligence (AI) holds the potential to make significant advancements in pathology. However, its actual implementation and certification for practical use are currently limited, often due to challenges related to model transferability. In this context, we investigate the factors influencing transferability and present methods aimed at enhancing the utilization of AI algorithms in pathology.</p><p><strong>Materials and methods: </strong>Various convolutional neural networks (CNNs) and vision transformers (ViTs) were trained using datasets from two institutions, along with the publicly available TCGA-MIBC dataset. These networks conducted predictions in urothelial tissue and intrahepatic cholangiocarcinoma (iCCA). The objective was to illustrate the impact of stain normalization, the influence of various artifacts during both training and testing, as well as the effects of the NoisyEnsemble method.</p><p><strong>Results: </strong>We were able to demonstrate that stain normalization of slides from different institutions has a significant positive effect on the inter-institutional transferability of CNNs and ViTs (respectively +13% and +10%). In addition, ViTs usually achieve a higher accuracy in the external test (here +1.5%). Similarly, we showcased how artifacts in test data can negatively affect CNN predictions and how incorporating these artifacts during training leads to improvements. Lastly, NoisyEnsembles of CNNs (better than ViTs) were shown to enhance transferability across different tissues and research questions (+7% Bladder, +15% iCCA).</p><p><strong>Discussion: </strong>It is crucial to be aware of the transferability challenge: achieving good performance during development does not necessarily translate to good performance in real-world applications. The inclusion of existing methods to enhance transferability, such as stain normalization and NoisyEnsemble, and their ongoing refinement, is of importance.</p>","PeriodicalId":74402,"journal":{"name":"Pathologie (Heidelberg, Germany)","volume":" ","pages":"124-132"},"PeriodicalIF":0.0000,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10901943/pdf/","citationCount":"0","resultStr":"{\"title\":\"[The model transferability of AI in digital pathology : Potential and reality].\",\"authors\":\"Robin S Mayer, Maximilian N Kinzler, Alexandra K Stoll, Steffen Gretser, Paul K Ziegler, Anna Saborowski, Henning Reis, Arndt Vogel, Peter J Wild, Nadine Flinner\",\"doi\":\"10.1007/s00292-024-01299-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Objective: </strong>Artificial intelligence (AI) holds the potential to make significant advancements in pathology. However, its actual implementation and certification for practical use are currently limited, often due to challenges related to model transferability. In this context, we investigate the factors influencing transferability and present methods aimed at enhancing the utilization of AI algorithms in pathology.</p><p><strong>Materials and methods: </strong>Various convolutional neural networks (CNNs) and vision transformers (ViTs) were trained using datasets from two institutions, along with the publicly available TCGA-MIBC dataset. These networks conducted predictions in urothelial tissue and intrahepatic cholangiocarcinoma (iCCA). The objective was to illustrate the impact of stain normalization, the influence of various artifacts during both training and testing, as well as the effects of the NoisyEnsemble method.</p><p><strong>Results: </strong>We were able to demonstrate that stain normalization of slides from different institutions has a significant positive effect on the inter-institutional transferability of CNNs and ViTs (respectively +13% and +10%). In addition, ViTs usually achieve a higher accuracy in the external test (here +1.5%). Similarly, we showcased how artifacts in test data can negatively affect CNN predictions and how incorporating these artifacts during training leads to improvements. Lastly, NoisyEnsembles of CNNs (better than ViTs) were shown to enhance transferability across different tissues and research questions (+7% Bladder, +15% iCCA).</p><p><strong>Discussion: </strong>It is crucial to be aware of the transferability challenge: achieving good performance during development does not necessarily translate to good performance in real-world applications. The inclusion of existing methods to enhance transferability, such as stain normalization and NoisyEnsemble, and their ongoing refinement, is of importance.</p>\",\"PeriodicalId\":74402,\"journal\":{\"name\":\"Pathologie (Heidelberg, Germany)\",\"volume\":\" \",\"pages\":\"124-132\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-03-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10901943/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Pathologie (Heidelberg, Germany)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1007/s00292-024-01299-5\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/2/19 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Pathologie (Heidelberg, Germany)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/s00292-024-01299-5","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/2/19 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

目的:人工智能(AI)具有在病理学领域取得重大进展的潜力。然而,人工智能的实际应用和实际使用认证目前还很有限,这通常是由于与模型可移植性相关的挑战造成的。在此背景下,我们研究了影响可移植性的因素,并提出了旨在提高病理学中人工智能算法利用率的方法:使用来自两家机构的数据集以及公开可用的 TCGA-MIBC 数据集训练了各种卷积神经网络(CNN)和视觉转换器(ViT)。这些网络对尿道组织和肝内胆管癌(iCCA)进行了预测。目的是说明染色正常化的影响、训练和测试过程中各种伪影的影响以及 NoisyEnsemble 方法的效果:我们能够证明,对来自不同机构的切片进行染色归一化处理对 CNN 和 ViT 的机构间可转移性有显著的积极影响(分别为 +13% 和 +10%)。此外,ViT 在外部测试中通常能获得更高的准确率(此处为 +1.5%)。同样,我们还展示了测试数据中的人工痕迹如何对 CNN 预测产生负面影响,以及在训练过程中纳入这些人工痕迹如何带来改进。最后,CNN 的 NoisyEnsembles(优于 ViTs)被证明可提高不同组织和研究问题之间的可转移性(膀胱 +7%,iCCA +15%):意识到可转移性的挑战至关重要:在开发过程中取得良好性能并不一定能在实际应用中转化为良好性能。因此,将染色归一化和 NoisyEnsemble 等现有方法纳入其中以提高可移植性,并对其进行不断完善是非常重要的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
[The model transferability of AI in digital pathology : Potential and reality].

Objective: Artificial intelligence (AI) holds the potential to make significant advancements in pathology. However, its actual implementation and certification for practical use are currently limited, often due to challenges related to model transferability. In this context, we investigate the factors influencing transferability and present methods aimed at enhancing the utilization of AI algorithms in pathology.

Materials and methods: Various convolutional neural networks (CNNs) and vision transformers (ViTs) were trained using datasets from two institutions, along with the publicly available TCGA-MIBC dataset. These networks conducted predictions in urothelial tissue and intrahepatic cholangiocarcinoma (iCCA). The objective was to illustrate the impact of stain normalization, the influence of various artifacts during both training and testing, as well as the effects of the NoisyEnsemble method.

Results: We were able to demonstrate that stain normalization of slides from different institutions has a significant positive effect on the inter-institutional transferability of CNNs and ViTs (respectively +13% and +10%). In addition, ViTs usually achieve a higher accuracy in the external test (here +1.5%). Similarly, we showcased how artifacts in test data can negatively affect CNN predictions and how incorporating these artifacts during training leads to improvements. Lastly, NoisyEnsembles of CNNs (better than ViTs) were shown to enhance transferability across different tissues and research questions (+7% Bladder, +15% iCCA).

Discussion: It is crucial to be aware of the transferability challenge: achieving good performance during development does not necessarily translate to good performance in real-world applications. The inclusion of existing methods to enhance transferability, such as stain normalization and NoisyEnsemble, and their ongoing refinement, is of importance.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Key considerations when implementing new diagnostic technologies in routine practice. Reconstructing 3D histological structures using machine learning (artificial intelligence) algorithms. [Microsatellite instability-What should be considered in routine examinations?] [Centers for experimental animal pathology still occupy a small but valuable niche in translational medicine-time for change?] Diagnostic and prognostic biomarkers for pancreatic neuroendocrine neoplasms.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1