酵母中的组合生物合成可产生 200 多种二萜类化合物

IF 6.8 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Metabolic engineering Pub Date : 2024-02-20 DOI:10.1016/j.ymben.2024.02.006
Maximilian Frey , Ulschan Bathe , Luca Meink , Gerd U. Balcke , Jürgen Schmidt , Andrej Frolov , Alena Soboleva , Ahmed Hassanin , Mehdi D. Davari , Oliver Frank , Verena Schlagbauer , Corinna Dawid , Alain Tissier
{"title":"酵母中的组合生物合成可产生 200 多种二萜类化合物","authors":"Maximilian Frey ,&nbsp;Ulschan Bathe ,&nbsp;Luca Meink ,&nbsp;Gerd U. Balcke ,&nbsp;Jürgen Schmidt ,&nbsp;Andrej Frolov ,&nbsp;Alena Soboleva ,&nbsp;Ahmed Hassanin ,&nbsp;Mehdi D. Davari ,&nbsp;Oliver Frank ,&nbsp;Verena Schlagbauer ,&nbsp;Corinna Dawid ,&nbsp;Alain Tissier","doi":"10.1016/j.ymben.2024.02.006","DOIUrl":null,"url":null,"abstract":"<div><p>Diterpenoids form a diverse group of natural products, many of which are or could become pharmaceuticals or industrial chemicals. The modular character of diterpene biosynthesis and the promiscuity of the enzymes involved make combinatorial biosynthesis a promising approach to generate libraries of diverse diterpenoids. Here, we report on the combinatorial assembly in yeast of ten diterpene synthases producing (+)-copalyl diphosphate-derived backbones and four cytochrome P450 oxygenases (CYPs) in diverse combinations. This resulted in the production of over 200 diterpenoids. Based on literature and chemical database searches, 162 of these compounds can be considered new-to-Nature. The CYPs accepted most substrates they were given but remained regioselective with few exceptions. Our results provide the basis for the systematic exploration of the diterpenoid chemical space in yeast using sequence databases.</p></div>","PeriodicalId":18483,"journal":{"name":"Metabolic engineering","volume":"82 ","pages":"Pages 193-200"},"PeriodicalIF":6.8000,"publicationDate":"2024-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1096717624000223/pdfft?md5=3b15c057941fe4f76834f1cf3baef433&pid=1-s2.0-S1096717624000223-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Combinatorial biosynthesis in yeast leads to over 200 diterpenoids\",\"authors\":\"Maximilian Frey ,&nbsp;Ulschan Bathe ,&nbsp;Luca Meink ,&nbsp;Gerd U. Balcke ,&nbsp;Jürgen Schmidt ,&nbsp;Andrej Frolov ,&nbsp;Alena Soboleva ,&nbsp;Ahmed Hassanin ,&nbsp;Mehdi D. Davari ,&nbsp;Oliver Frank ,&nbsp;Verena Schlagbauer ,&nbsp;Corinna Dawid ,&nbsp;Alain Tissier\",\"doi\":\"10.1016/j.ymben.2024.02.006\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Diterpenoids form a diverse group of natural products, many of which are or could become pharmaceuticals or industrial chemicals. The modular character of diterpene biosynthesis and the promiscuity of the enzymes involved make combinatorial biosynthesis a promising approach to generate libraries of diverse diterpenoids. Here, we report on the combinatorial assembly in yeast of ten diterpene synthases producing (+)-copalyl diphosphate-derived backbones and four cytochrome P450 oxygenases (CYPs) in diverse combinations. This resulted in the production of over 200 diterpenoids. Based on literature and chemical database searches, 162 of these compounds can be considered new-to-Nature. The CYPs accepted most substrates they were given but remained regioselective with few exceptions. Our results provide the basis for the systematic exploration of the diterpenoid chemical space in yeast using sequence databases.</p></div>\",\"PeriodicalId\":18483,\"journal\":{\"name\":\"Metabolic engineering\",\"volume\":\"82 \",\"pages\":\"Pages 193-200\"},\"PeriodicalIF\":6.8000,\"publicationDate\":\"2024-02-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S1096717624000223/pdfft?md5=3b15c057941fe4f76834f1cf3baef433&pid=1-s2.0-S1096717624000223-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Metabolic engineering\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1096717624000223\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Metabolic engineering","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1096717624000223","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

二萜类化合物是一类多种多样的天然产物,其中许多已经或可能成为药物或工业化学品。二萜生物合成的模块化特征和相关酶的杂交性使组合生物合成成为生成多种二萜化合物库的一种有前途的方法。在这里,我们报告了在酵母中以不同的组合方式组装 10 种产生 (+)-copalyl diphosphate-derived 骨架的二萜合成酶和 4 种细胞色素 P450 加氧酶(CYPs)的情况。由此产生了 200 多种二萜类化合物。根据文献和化学数据库搜索,这些化合物中有 162 种可被视为自然界的新化合物。这些 CYPs 接受了大部分底物,但仍具有区域选择性,只有少数例外。我们的研究结果为利用序列数据库系统探索酵母中的二萜化学空间奠定了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Combinatorial biosynthesis in yeast leads to over 200 diterpenoids

Diterpenoids form a diverse group of natural products, many of which are or could become pharmaceuticals or industrial chemicals. The modular character of diterpene biosynthesis and the promiscuity of the enzymes involved make combinatorial biosynthesis a promising approach to generate libraries of diverse diterpenoids. Here, we report on the combinatorial assembly in yeast of ten diterpene synthases producing (+)-copalyl diphosphate-derived backbones and four cytochrome P450 oxygenases (CYPs) in diverse combinations. This resulted in the production of over 200 diterpenoids. Based on literature and chemical database searches, 162 of these compounds can be considered new-to-Nature. The CYPs accepted most substrates they were given but remained regioselective with few exceptions. Our results provide the basis for the systematic exploration of the diterpenoid chemical space in yeast using sequence databases.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Metabolic engineering
Metabolic engineering 工程技术-生物工程与应用微生物
CiteScore
15.60
自引率
6.00%
发文量
140
审稿时长
44 days
期刊介绍: Metabolic Engineering (MBE) is a journal that focuses on publishing original research papers on the directed modulation of metabolic pathways for metabolite overproduction or the enhancement of cellular properties. It welcomes papers that describe the engineering of native pathways and the synthesis of heterologous pathways to convert microorganisms into microbial cell factories. The journal covers experimental, computational, and modeling approaches for understanding metabolic pathways and manipulating them through genetic, media, or environmental means. Effective exploration of metabolic pathways necessitates the use of molecular biology and biochemistry methods, as well as engineering techniques for modeling and data analysis. MBE serves as a platform for interdisciplinary research in fields such as biochemistry, molecular biology, applied microbiology, cellular physiology, cellular nutrition in health and disease, and biochemical engineering. The journal publishes various types of papers, including original research papers and review papers. It is indexed and abstracted in databases such as Scopus, Embase, EMBiology, Current Contents - Life Sciences and Clinical Medicine, Science Citation Index, PubMed/Medline, CAS and Biotechnology Citation Index.
期刊最新文献
Unraveling productivity-enhancing genes in Chinese hamster ovary cells via CRISPR activation screening using recombinase-mediated cassette exchange system. The faucet knob effect of DptE crotonylation on the initial flow of daptomycin biosynthesis. Versatile Xylose and Arabinose Genetic Switches development for Yeasts. Not all cytochrome b5s are created equal: How a specific CytB5 boosts forskolin biosynthesis in Saccharomyces cerevisiae Applying metabolic control strategies to engineered T cell cancer therapies
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1