解决 tp53M214K 基因型问题的可靠闭管方法

Zebrafish Pub Date : 2024-06-01 Epub Date: 2024-02-20 DOI:10.1089/zeb.2023.0030
Katherine M Silvius, Genevieve C Kendall
{"title":"解决 tp53M214K 基因型问题的可靠闭管方法","authors":"Katherine M Silvius, Genevieve C Kendall","doi":"10.1089/zeb.2023.0030","DOIUrl":null,"url":null,"abstract":"<p><p>The <i>tp53</i><sup>M214K</sup> zebrafish mutant is a versatile platform with which to model a diverse spectrum of human diseases. However, currently available genotyping methods for this mutant require lengthy hands-on processes such as restriction digests and outsourced Sanger sequencing. To address this deficiency, we leveraged high-resolution melting analysis technology in conjunction with a parallel, in-tandem wild-type spike-in approach to develop a robust genotyping protocol capable of discriminating <i>tp53</i><sup>M214K</sup> zygosity. In this study, we describe our method in detail. We anticipate that our genotyping protocol will benefit researchers utilizing the <i>tp53</i><sup>M214K</sup> zebrafish mutant by offering reliable results with a shorter turnaround time, lower personnel involvement, and higher throughput than traditional methods, thereby decreasing the burden of genotyping and maximizing research efficiency.</p>","PeriodicalId":94273,"journal":{"name":"Zebrafish","volume":" ","pages":"250-254"},"PeriodicalIF":0.0000,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11296207/pdf/","citationCount":"0","resultStr":"{\"title\":\"A Robust Closed-Tube Method for Resolving <i>tp53</i><sup>M214K</sup> Genotypes.\",\"authors\":\"Katherine M Silvius, Genevieve C Kendall\",\"doi\":\"10.1089/zeb.2023.0030\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The <i>tp53</i><sup>M214K</sup> zebrafish mutant is a versatile platform with which to model a diverse spectrum of human diseases. However, currently available genotyping methods for this mutant require lengthy hands-on processes such as restriction digests and outsourced Sanger sequencing. To address this deficiency, we leveraged high-resolution melting analysis technology in conjunction with a parallel, in-tandem wild-type spike-in approach to develop a robust genotyping protocol capable of discriminating <i>tp53</i><sup>M214K</sup> zygosity. In this study, we describe our method in detail. We anticipate that our genotyping protocol will benefit researchers utilizing the <i>tp53</i><sup>M214K</sup> zebrafish mutant by offering reliable results with a shorter turnaround time, lower personnel involvement, and higher throughput than traditional methods, thereby decreasing the burden of genotyping and maximizing research efficiency.</p>\",\"PeriodicalId\":94273,\"journal\":{\"name\":\"Zebrafish\",\"volume\":\" \",\"pages\":\"250-254\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11296207/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Zebrafish\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1089/zeb.2023.0030\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/2/20 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Zebrafish","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1089/zeb.2023.0030","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/2/20 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

tp53M214K 斑马鱼突变体是一个多功能平台,可用于模拟多种人类疾病。然而,目前针对这种突变体的基因分型方法需要漫长的实践过程,如限制性消化和外包 Sanger 测序。为了弥补这一不足,我们利用高分辨率熔解分析技术,结合并行、串联野生型穗入方法,开发出一种能够鉴别 tp53M214K 子系的稳健基因分型方案。在本研究中,我们将详细介绍我们的方法。我们预计,与传统方法相比,我们的基因分型方案能以更短的周转时间、更少的人员参与和更高的通量提供可靠的结果,从而减轻基因分型的负担并最大限度地提高研究效率,这将使利用 tp53M214K 斑马鱼突变体的研究人员受益匪浅。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
A Robust Closed-Tube Method for Resolving tp53M214K Genotypes.

The tp53M214K zebrafish mutant is a versatile platform with which to model a diverse spectrum of human diseases. However, currently available genotyping methods for this mutant require lengthy hands-on processes such as restriction digests and outsourced Sanger sequencing. To address this deficiency, we leveraged high-resolution melting analysis technology in conjunction with a parallel, in-tandem wild-type spike-in approach to develop a robust genotyping protocol capable of discriminating tp53M214K zygosity. In this study, we describe our method in detail. We anticipate that our genotyping protocol will benefit researchers utilizing the tp53M214K zebrafish mutant by offering reliable results with a shorter turnaround time, lower personnel involvement, and higher throughput than traditional methods, thereby decreasing the burden of genotyping and maximizing research efficiency.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
An Improved, High-Yield Method for Isolating Nuclei from Individual Zebrafish Embryos for Single-Nucleus RNA Sequencing. Understanding Rigor Mortis Impacts on Zebrafish Gamete Viability. Small Fishes, Big Issues: Species Delimitation in Hemigrammus Marginatus, Gill, 1958 (Acestrorhamphidae: Pristellinae) from Brazilian Coastal Basins Based on Integrative Genetics. An Automated Low-Cost Solution for Creating a Multiple-Step Thermal Gradient to Record Daily Fish Thermoregulatory Behavior. An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1