单细胞综合转录组学揭示了角质形成细胞在头颈部鳞状细胞癌中的作用。

IF 2 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Journal of Applied Genetics Pub Date : 2024-12-01 Epub Date: 2024-02-29 DOI:10.1007/s13353-024-00842-7
Shaokun Liu, Meng Lian, Boxuan Han, Jugao Fang, Zhenlin Wang
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引用次数: 0

摘要

头颈部鳞状细胞癌(HNSCC)是一种发病率和死亡率都很高的常见恶性肿瘤。了解 HNSCC 的分子机制、确定预后标志物和治疗靶点对改善患者预后至关重要。在这项研究中,我们利用单细胞 RNA 测序(scRNA-seq)和大容量 RNA-seq 数据在细胞水平上对 HNSCC 进行了全面分析。我们发现角质形成细胞是肿瘤样本中最主要的细胞类型,这表明角质形成细胞在 HNSCC 的发展过程中扮演着潜在的角色。通过 hdWGCNA 共表达网络分析,我们发现了与 HNSCC 进展相关的基因模块。此外,我们还构建了一个基于特定基因的预后模型,并在多个数据集中证明了其强大的预测性能。该模型与肿瘤进展相关的免疫细胞浸润模式和信号通路有很强的相关性。此外,药物敏感性分析揭示了 HNSCC 治疗的潜在化疗靶点。我们的研究结果为了解 HNSCC 的分子特征和免疫微环境提供了有价值的见解,为临床实践中的预后预测和治疗干预提供了新的视角。有必要开展进一步的研究来验证和扩展这些发现,最终改善 HNSCC 患者的预后。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Single-cell integrated transcriptomics reveals the role of keratinocytes in head and neck squamous cell carcinoma.

Head and neck squamous cell carcinoma (HNSCC) is a prevalent malignant tumor with significant morbidity and mortality. Understanding the molecular mechanisms of HNSCC and identifying prognostic markers and therapeutic targets are crucial for improving patient outcomes. In this study, we utilized single-cell RNA sequencing (scRNA-seq) and bulk RNA-seq data to comprehensively analyze HNSCC at the cellular level. We identified keratinocytes as the predominant cell type in tumor samples, suggesting their potential role in HNSCC development. Through hdWGCNA co-expression network analysis, we identified gene modules associated with HNSCC progression. Furthermore, we constructed a prognostic model based on specific genes and demonstrated its robust predictive performance in multiple datasets. The model exhibited strong correlations with immune cell infiltration patterns and signaling pathways related to tumor progression. Additionally, drug sensitivity analysis revealed potential chemotherapeutic targets for HNSCC treatment. Our findings provide valuable insights into the molecular characteristics and immune microenvironment of HNSCC, offering new perspectives for prognosis prediction and therapeutic interventions in clinical practice. Further research is warranted to validate and expand upon these findings, ultimately improving patient outcomes in HNSCC.

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来源期刊
Journal of Applied Genetics
Journal of Applied Genetics 生物-生物工程与应用微生物
CiteScore
4.30
自引率
4.20%
发文量
62
审稿时长
6-12 weeks
期刊介绍: The Journal of Applied Genetics is an international journal on genetics and genomics. It publishes peer-reviewed original papers, short communications (including case reports) and review articles focused on the research of applicative aspects of plant, human, animal and microbial genetics and genomics.
期刊最新文献
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