用于扩散核磁共振成像中球形解卷积的 E(3) × SO(3) - Equivariant 网络

Axel Elaldi, Guido Gerig, Neel Dey
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引用次数: 0

摘要

我们提出了旋转-平移等变球形解卷积(RT-ESD),这是一种 E(3)×SO(3) 等变框架,用于对每个体素都包含球形信号的体积进行稀疏解卷积。这种 6D 数据自然出现在弥散核磁共振成像(dMRI)中,这是一种广泛用于测量微观结构和结构连接性的医学成像模式。由于每个 dMRI 象素通常是各种重叠结构的混合物,因此需要进行盲解卷以恢复交叉解剖结构,如白质束。现有的 dMRI 研究采用迭代或深度学习方法进行稀疏球形去卷积,但通常不会考虑相邻测量值之间的关系。这项工作构建了等变深度学习层,在尊重空间旋转、反射和平移对称性的同时,也尊重体素球面旋转的对称性。因此,RT-ESD 在多个任务上都比以前的工作有所改进,包括 DiSCo 数据集上的纤维恢复、真实世界活体人脑 dMRI 上的去卷积衍生部分体积估计,以及 Tractometer 数据集上纤维束图的改进下游重建。我们的实施方案可在 https://github.com/AxelElaldi/e3so3_conv 上查阅。
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E(3) × SO(3)-Equivariant Networks for Spherical Deconvolution in Diffusion MRI.

We present Roto-Translation Equivariant Spherical Deconvolution (RT-ESD), an E(3)×SO(3) equivariant framework for sparse deconvolution of volumes where each voxel contains a spherical signal. Such 6D data naturally arises in diffusion MRI (dMRI), a medical imaging modality widely used to measure microstructure and structural connectivity. As each dMRI voxel is typically a mixture of various overlapping structures, there is a need for blind deconvolution to recover crossing anatomical structures such as white matter tracts. Existing dMRI work takes either an iterative or deep learning approach to sparse spherical deconvolution, yet it typically does not account for relationships between neighboring measurements. This work constructs equivariant deep learning layers which respect to symmetries of spatial rotations, reflections, and translations, alongside the symmetries of voxelwise spherical rotations. As a result, RT-ESD improves on previous work across several tasks including fiber recovery on the DiSCo dataset, deconvolution-derived partial volume estimation on real-world in vivo human brain dMRI, and improved downstream reconstruction of fiber tractograms on the Tractometer dataset. Our implementation is available at https://github.com/AxelElaldi/e3so3_conv.

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