Yuting Lin, Zhongxin Huang, Baogen Zhang, Hanhui Yang, Shu Yang
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Single-sample gene set enrichment analysis was employed to assess the immune levels of high-risk (HR) and low-risk (LR) groups. The sensitivity of BC patients in the two groups to common anti-tumor drugs was evaluated by utilizing the Genomics of Drug Sensitivity in Cancer database. 12 MMRGs significantly associated with survival were selected from 1234 MMRGs. A 12-gene risk score prognostic model was built. In the multivariate regression analysis incorporating classical clinical factors, the MMRG-related risk score remained an independent prognostic factor. As revealed by tumor immune microenvironment analysis, the LR group with higher survival rates had elevated immune levels. The drug sensitivity results unmasked that the LR group demonstrated higher sensitivity to Irinotecan, Nilotinib, and Oxaliplatin, while the HR group demonstrated higher sensitivity to Lapatinib. 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引用次数: 0
摘要
作为女性最常见的恶性肿瘤之一,乳腺癌(BC)与代谢功能障碍密切相关。然而,线粒体代谢相关基因(MMRGs)与乳腺癌之间的相关性仍不清楚。BC的训练数据集和验证数据集分别来自癌症基因组图谱(The Cancer Genome Atlas)和基因表达总库(Gene Expression Omnibus)数据库。MMRG 相关数据来自分子特征数据库。基于单变量、LASSO和多变量Cox回归分析,建立了一个包含MMRG的风险评分预后模型。通过回归分析确定了影响BC预后的独立因素,并以提名图的形式呈现。采用单样本基因组富集分析评估高危(HR)组和低危(LR)组的免疫水平。利用癌症药物敏感性基因组学数据库评估了两组 BC 患者对常用抗肿瘤药物的敏感性。从1234个MMRG中筛选出了12个与生存率明显相关的MMRG。建立了一个 12 基因风险评分预后模型。在结合经典临床因素的多变量回归分析中,MMRG相关风险评分仍然是一个独立的预后因素。肿瘤免疫微环境分析显示,生存率较高的 LR 组免疫水平升高。药物敏感性结果显示,LR组对伊立替康、尼洛替尼和奥沙利铂的敏感性更高,而HR组对拉帕替尼的敏感性更高。MMRG特征的发展提供了对BC线粒体代谢的全面了解,有助于预测预后和肿瘤微环境,并为不同MMRG风险评分的BC患者提供了有前景的治疗选择。
Construction and Analysis of a Mitochondrial Metabolism-Related Prognostic Model for Breast Cancer to Evaluate Survival and Immunotherapy.
As one of the most prevalent malignancies among women, breast cancer (BC) is tightly linked to metabolic dysfunction. However, the correlation between mitochondrial metabolism-related genes (MMRGs) and BC remains unclear. The training and validation datasets for BC were obtained from The Cancer Genome Atlas and Gene Expression Omnibus databases, respectively. MMRG-related data were obtained from the Molecular Signatures Database. A risk score prognostic model incorporating MMRGs was established based on univariate, LASSO, and multivariate Cox regression analyses. Independent factors affecting BC prognosis were identified through regression analysis and presented in a nomogram. Single-sample gene set enrichment analysis was employed to assess the immune levels of high-risk (HR) and low-risk (LR) groups. The sensitivity of BC patients in the two groups to common anti-tumor drugs was evaluated by utilizing the Genomics of Drug Sensitivity in Cancer database. 12 MMRGs significantly associated with survival were selected from 1234 MMRGs. A 12-gene risk score prognostic model was built. In the multivariate regression analysis incorporating classical clinical factors, the MMRG-related risk score remained an independent prognostic factor. As revealed by tumor immune microenvironment analysis, the LR group with higher survival rates had elevated immune levels. The drug sensitivity results unmasked that the LR group demonstrated higher sensitivity to Irinotecan, Nilotinib, and Oxaliplatin, while the HR group demonstrated higher sensitivity to Lapatinib. The development of MMRG characteristics provides a comprehensive understanding of mitochondrial metabolism in BC, aiding in the prediction of prognosis and tumor microenvironment, and offering promising therapeutic choices for BC patients with different MMRG risk scores.
期刊介绍:
The Journal of Membrane Biology is dedicated to publishing high-quality science related to membrane biology, biochemistry and biophysics. In particular, we welcome work that uses modern experimental or computational methods including but not limited to those with microscopy, diffraction, NMR, computer simulations, or biochemistry aimed at membrane associated or membrane embedded proteins or model membrane systems. These methods might be applied to study topics like membrane protein structure and function, membrane mediated or controlled signaling mechanisms, cell-cell communication via gap junctions, the behavior of proteins and lipids based on monolayer or bilayer systems, or genetic and regulatory mechanisms controlling membrane function.
Research articles, short communications and reviews are all welcome. We also encourage authors to consider publishing ''negative'' results where experiments or simulations were well performed, but resulted in unusual or unexpected outcomes without obvious explanations.
While we welcome connections to clinical studies, submissions that are primarily clinical in nature or that fail to make connections to the basic science issues of membrane structure, chemistry and function, are not appropriate for the journal. In a similar way, studies that are primarily descriptive and narratives of assays in a clinical or population study are best published in other journals. If you are not certain, it is entirely appropriate to write to us to inquire if your study is a good fit for the journal.