涵盖阿尔茨海默病进展的数学模型范围综述

IF 2.5 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in Neuroinformatics Pub Date : 2024-02-28 DOI:10.3389/fninf.2024.1281656
Seyedadel Moravveji, Nicolas Doyon, Javad Mashreghi, Simon Duchesne
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引用次数: 0

摘要

阿尔茨海默病是一种复杂、多因素和多参数的神经退行性病变。数学模型可以帮助理解这样一个复杂的问题,它提供了一种探索和概念化原理的方法,将生物知识与实验数据融合成一个可以进行模拟和外部验证的模型,而所有这些都不需要进行大量的临床试验。我们按照 PRISMA 标准,对描述生物物理因素导致阿尔茨海默病发病和演变的数学模型进行了一次范围审查。我们在 PubMed 数据库中采用的搜索策略共搜索到 846 个条目。在使用了排除标准后,只剩下 17 篇研究,我们从中提取了数据,这些数据主要集中在数学建模的三个方面:作者如何处理连续时间(因为即使测量是准时的,阿尔茨海默病的生物过程也在不断演变)、如何求解模型,以及如何处理模型的高维性和非线性。大多数文章从细胞层面对阿尔茨海默病进行建模,在短时间内(如几分钟或几小时)发挥作用,即微观视角(12/17);其余文章考虑了时间尺度较长(如几年或几十年)的区域或大脑层面的过程(宏观视角)。大多数论文主要关注β淀粉样蛋白(8 篇),少数论文同时描述了β淀粉样蛋白和tau蛋白(3 篇),而有些论文考虑的因素超过了这两个因素(6 篇)。模型使用了偏微分方程(3 个)、常微分方程(7 个)以及偏微分方程和常微分方程(3 个)。有些模型没有说明其数学形式(n = 4)。只有少数论文(4/17)进行了敏感性分析。总体而言,我们发现只有两项研究的参数和结论是有效的,另有两项研究的参数和结论是部分有效的。因此,大多数研究(n = 13)要么无效,要么信息不足,无法确定其状态。这也是我们论文的主要发现,即严重的缺陷使其结果无效或不可再现。这些缺陷来自于方法描述不足、校准不佳或无法通过实验验证或校准模型。未来的作者应该解决这些缺陷,以释放数学模型在阿尔茨海默病中的效用。
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A scoping review of mathematical models covering Alzheimer's disease progression

Alzheimer's disease is a complex, multi-factorial, and multi-parametric neurodegenerative etiology. Mathematical models can help understand such a complex problem by providing a way to explore and conceptualize principles, merging biological knowledge with experimental data into a model amenable to simulation and external validation, all without the need for extensive clinical trials. We performed a scoping review of mathematical models describing the onset and evolution of Alzheimer's disease as a result of biophysical factors following the PRISMA standard. Our search strategy applied to the PubMed database yielded 846 entries. After using our exclusion criteria, only 17 studies remained from which we extracted data, which focused on three aspects of mathematical modeling: how authors addressed continuous time (since even when the measurements are punctual, the biological processes underlying Alzheimer's disease evolve continuously), how models were solved, and how the high dimensionality and non-linearity of models were managed. Most articles modeled Alzheimer's disease at the cellular level, operating on a short time scale (e.g., minutes or hours), i.e., the micro view (12/17); the rest considered regional or brain-level processes with longer timescales (e.g., years or decades) (the macro view). Most papers were concerned primarily with amyloid beta (n = 8), few described both amyloid beta and tau proteins (n = 3), while some considered more than these two factors (n = 6). Models used partial differential equations (n = 3), ordinary differential equations (n = 7), and both partial differential equations and ordinary differential equations (n = 3). Some did not specify their mathematical formalism (n = 4). Sensitivity analyses were performed in only a small number of papers (4/17). Overall, we found that only two studies could be considered valid in terms of parameters and conclusions, and two more were partially valid. This puts the majority (n = 13) as being either invalid or with insufficient information to ascertain their status. This was the main finding of our paper, in that serious shortcomings make their results invalid or non-reproducible. These shortcomings come from insufficient methodological description, poor calibration, or the impossibility of experimentally validating or calibrating the model. Those shortcomings should be addressed by future authors to unlock the usefulness of mathematical models in Alzheimer's disease.

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来源期刊
Frontiers in Neuroinformatics
Frontiers in Neuroinformatics MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
4.80
自引率
5.70%
发文量
132
审稿时长
14 weeks
期刊介绍: Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states. Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.
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