将《生物样本库数据共享最低限度信息》(MIABIS)核心术语更新至第三版。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-08-01 Epub Date: 2024-03-18 DOI:10.1089/bio.2023.0074
Niina Eklund, Cäcilia Engels, Michael Neumann, Andrzej Strug, Esther van Enckevort, Ronny Baber, Margreet Bloemers, Annelies Debucquoy, Aad van der Lugt, Heimo Müller, Lauri Parkkonen, Philip R Quinlan, Esmond Urwin, Petr Holub, Kaisa Silander, Gabriele Anton
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引用次数: 0

摘要

简介生物样本库数据共享最低限度信息(MIABIS)是一个生物样本库专用术语,它使生物样本库相关数据的共享能够在各种数据库实施中实现不同的目的。在使用 4 年后,随着 MIABIS 个人层面组件 "样本"、"样本捐献者 "和 "事件 "第一版的推出,有必要对该术语进行修订,特别是要将更多在数据领域而非样本领域工作的生物库纳入其中。材料与方法:九个代表不同类型生物库、研究和网络的使用案例参与了开发工作。它们代表了 MIABIS 早期未包含的数据类型、特定样本类型或组织级别。为了支持我们对生物库实体的修订,我们对欧洲生物库进行了一次调查,以了解它们所提供的服务。生物库的一个重要利益相关群体包括作为生物库主要用户的研究人员。为了使 MIABIS 对研究人员更加友好,我们收集了不同的样本/数据请求,以详细分析术语调整需求。在更新过程中,核心术语由一大批专家反复审核,直到达成共识。结果:此次更新对 MIABIS 进行了调整,以涵盖数据驱动型生物库和数据收集,同时还描述了除回顾性样本外,生物库为用户提供的服务和功能。术语范围也扩大到非人类来源的样本和数据收集。此外,还汇编了一套组织属性来描述网络。讨论通过扩展 MIABIS Core v3,使其涵盖生物银行领域的更多主题,从而提高了其可用性。此外,重点还放在了更通用的术语上,以及属性与个体级实体样本、样本捐献者和事件的协调上,以保持整体术语的最小化。这项工作改进了 MIABIS 术语的内部语义。
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Update of the Minimum Information About BIobank Data Sharing (MIABIS) Core Terminology to the 3rd Version.

Introduction: The Minimum Information About BIobank Data Sharing (MIABIS) is a biobank-specific terminology enabling the sharing of biobank-related data for different purposes across a wide range of database implementations. After 4 years in use and with the first version of the individual-level MIABIS component Sample, Sample donor, and Event, it was necessary to revise the terminology, especially to include biobanks that work more in the data domain than with samples. Materials & Methods: Nine use-cases representing different types of biobanks, studies, and networks participated in the development work. They represent types of data, specific sample types, or levels of organization that were not included earlier in MIABIS. To support our revision of the Biobank entity, we conducted a survey of European biobanks to chart the services they provide. An important stakeholder group for biobanks include researchers as the main users of biobanks. To be able to render MIABIS more researcher-friendly, we collected different sample/data requests to analyze the terminology adjustment needs in detail. During the update process, the Core terminology was iteratively reviewed by a large group of experts until a consensus was reached. Results: With this update, MIABIS was adjusted to encompass data-driven biobanks and to include data collections, while also describing the services and capabilities biobanks offer to their users, besides the retrospective samples. The terminology was also extended to accommodate sample and data collections of nonhuman origin. Additionally, a set of organizational attributes was compiled to describe networks. Discussion: The usability of MIABIS Core v3 was increased by extending it to cover more topics of the biobanking domain. Additionally, the focus was on a more general terminology and harmonization of attributes with the individual-level entities Sample, Sample donor, and Event to keep the overall terminology minimal. With this work, the internal semantics of the MIABIS terminology was improved.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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