三叉神经痛转录组公告草案。

IF 1.4 4区 生物学 Q2 ZOOLOGY Journal of nematology Pub Date : 2024-03-20 eCollection Date: 2024-03-01 DOI:10.2478/jofnem-2024-0007
Manish Kumar, Neeraj, Alkesh Hada, Vishal Singh Somvanshi, Ashish Kumar Singh, Yashwant Kumar Yadava, Pradeep Kumar Jain, Kishore Gaikwad, Anil Sirohi
{"title":"三叉神经痛转录组公告草案。","authors":"Manish Kumar, Neeraj, Alkesh Hada, Vishal Singh Somvanshi, Ashish Kumar Singh, Yashwant Kumar Yadava, Pradeep Kumar Jain, Kishore Gaikwad, Anil Sirohi","doi":"10.2478/jofnem-2024-0007","DOIUrl":null,"url":null,"abstract":"<p><p><i>Anguina tritici</i>, the wheat seed gall nematode, causes the 'ear-cockle' or seed gall disease of wheat (<i>Triticum sp.</i>), leading to an extensive decline of yield (30-70%) in underdeveloped wheat cultivating countries of the world. The nematode is known to survive in anhydrobiotic conditions for up to 32 years. Here, we present the first transcriptome assembly of <i>A. tritici</i>, which will be a valuable resource for understanding the genes responsible for nematode survival and above-ground plant parasitism. The final 133.2 Mb assembly consists of 105606 open reading frames (including isoforms) with the following BUSCO scores against Nematoda database: 80.3% complete (16.4% single copy and 63.9% duplicated), 2.1% fragmented, and 17.6% missing.</p>","PeriodicalId":16475,"journal":{"name":"Journal of nematology","volume":null,"pages":null},"PeriodicalIF":1.4000,"publicationDate":"2024-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10954354/pdf/","citationCount":"0","resultStr":"{\"title\":\"A Draft Transcriptome Announcement of <i>Anguina tritici</i>.\",\"authors\":\"Manish Kumar, Neeraj, Alkesh Hada, Vishal Singh Somvanshi, Ashish Kumar Singh, Yashwant Kumar Yadava, Pradeep Kumar Jain, Kishore Gaikwad, Anil Sirohi\",\"doi\":\"10.2478/jofnem-2024-0007\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Anguina tritici</i>, the wheat seed gall nematode, causes the 'ear-cockle' or seed gall disease of wheat (<i>Triticum sp.</i>), leading to an extensive decline of yield (30-70%) in underdeveloped wheat cultivating countries of the world. The nematode is known to survive in anhydrobiotic conditions for up to 32 years. Here, we present the first transcriptome assembly of <i>A. tritici</i>, which will be a valuable resource for understanding the genes responsible for nematode survival and above-ground plant parasitism. The final 133.2 Mb assembly consists of 105606 open reading frames (including isoforms) with the following BUSCO scores against Nematoda database: 80.3% complete (16.4% single copy and 63.9% duplicated), 2.1% fragmented, and 17.6% missing.</p>\",\"PeriodicalId\":16475,\"journal\":{\"name\":\"Journal of nematology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2024-03-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10954354/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of nematology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.2478/jofnem-2024-0007\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/3/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"ZOOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of nematology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.2478/jofnem-2024-0007","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/3/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"ZOOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

小麦种瘿线虫 Anguina tritici 会引起小麦(Triticum sp.)的 "穗囊病 "或种瘿病,导致世界上不发达小麦种植国家的小麦大面积减产(30-70%)。据了解,线虫可在无水生物条件下存活长达 32 年。在这里,我们首次展示了三尖杉线虫的转录组,这将是了解线虫生存和地上植物寄生基因的宝贵资源。最终的 133.2 Mb 汇编包括 105606 个开放阅读框(包括同工酶),根据线虫数据库的 BUSCO 评分如下:80.3%完整(16.4%单拷贝,63.9%重复),2.1%片段,17.6%缺失。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
A Draft Transcriptome Announcement of Anguina tritici.

Anguina tritici, the wheat seed gall nematode, causes the 'ear-cockle' or seed gall disease of wheat (Triticum sp.), leading to an extensive decline of yield (30-70%) in underdeveloped wheat cultivating countries of the world. The nematode is known to survive in anhydrobiotic conditions for up to 32 years. Here, we present the first transcriptome assembly of A. tritici, which will be a valuable resource for understanding the genes responsible for nematode survival and above-ground plant parasitism. The final 133.2 Mb assembly consists of 105606 open reading frames (including isoforms) with the following BUSCO scores against Nematoda database: 80.3% complete (16.4% single copy and 63.9% duplicated), 2.1% fragmented, and 17.6% missing.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of nematology
Journal of nematology 生物-动物学
CiteScore
2.90
自引率
7.70%
发文量
40
审稿时长
14 weeks
期刊介绍: Journal of Nematology is the official technical and scientific communication publication of the Society of Nematologists since 1969. The journal publishes original papers on all aspects of basic, applied, descriptive, theoretical or experimental nematology and adheres to strict peer-review policy. Other categories of papers include invited reviews, research notes, abstracts of papers presented at annual meetings, and special publications as appropriate.
期刊最新文献
Evaluating Vacuum and Steam Heat to Eliminate Pinewood Nematodes in Naturally Infested Whole Pine Logs. Description of two new Pristionchus species from South Korea. Description and Molecular Characterization of a New Dorylaimid Nematode, Mesodorylaimus pini n. sp. (Nematoda: Dorylaimidae) from Korea. JON 63rd Meeting 2024 Park City ABSTRACTS. Nematode genome announcement: A chromosome-scale genome assembly for the Pristionchus pacificus reference mapping strain PS1843.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1