RABiT-III:非专业生物测定机构的自动微核试验。

IF 2.5 3区 医学 Q2 BIOLOGY Radiation research Pub Date : 2024-06-01 DOI:10.1667/RADE-23-00120.1
Mikhail Repin, Guy Garty, Ralph J Garippa, David J Brenner
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引用次数: 0

摘要

通过细胞分裂受阻微核试验检测的微核是电离辐射照射的重要指标,尤其是在短期淋巴细胞培养中。外周血淋巴细胞测定被认为是自动生物模拟的主要候选方法。在哥伦比亚大学放射研究中心之前的一个项目中,我们使用 96 孔 ANSI/SLAS 微孔板标准格式,并依靠名为 "快速自动生物量测定工具"(RABiT)的成熟生物技术机器人系统,实现了该测定的自动化。在本研究中,我们介绍了在外部高通量设施(RABiT-III)中应用类似的自动化生物技术装置来实施同样的自动化细胞分裂受阻微核试验的情况。具体来说,我们采用了安捷伦 BRAVO 液体处理系统和通用电气 IN 细胞分析仪 6000 成像系统以及珀金埃尔默哥伦布图像数据存储和分析系统。值得注意的是,该分析系统具有嵌入式 PhenoLOGIC 机器学习模块,简化了 CBMN 检测图像分析中细胞分类算法的创建,并能生成辐射剂量反应曲线。这项研究强调了 RABiT-II CBMN 方案对非专业生物模拟中心的各种 RABiT-III 生物技术机器人平台的适应性。此外,它还凸显了机器学习在快速开发对高通量自动分析 RABiT-III 图像至关重要的算法方面的优势。
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RABiT-III: an Automated Micronucleus Assay at a Non-Specialized Biodosimetry Facility.

Micronuclei, detected through the cytokinesis-block micronucleus assay, are valuable indicators of ionizing radiation exposure, especially in short-term lymphocyte cultures. The peripheral human blood lymphocyte assay is recognized as a prime candidate for automated biodosimetry. In a prior project at the Columbia University Center for Radiological Research, we automated this assay using the 96-well ANSI/SLAS microplate standard format and relied on established biotech robotic systems named Rapid Automated Biodosimetry Tool (RABiT). In this study, we present the application of a similar automated biotech setup at an external high-throughput facility (RABiT-III) to implement the same automated cytokinesis-block micronucleus assay. Specifically, we employed the Agilent BRAVO liquid-handling system and GE IN Cell Analyzer 6000 imaging system in conjunction with the PerkinElmer Columbus image data storage and analysis system. Notably, this analysis system features an embedded PhenoLOGIC machine learning module, simplifying the creation of cell classification algorithms for CBMN assay image analysis and enabling the generation of radiation dose-response curves. This investigation underscores the adaptability of the RABiT-II CBMN protocol to diverse RABiT-III biotech robotic platforms in non-specialized biodosimetry centers. Furthermore, it highlights the advantages of machine learning in rapidly developing algorithms crucial for the high-throughput automated analysis of RABiT-III images.

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来源期刊
Radiation research
Radiation research 医学-核医学
CiteScore
5.10
自引率
8.80%
发文量
179
审稿时长
1 months
期刊介绍: Radiation Research publishes original articles dealing with radiation effects and related subjects in the areas of physics, chemistry, biology and medicine, including epidemiology and translational research. The term radiation is used in its broadest sense and includes specifically ionizing radiation and ultraviolet, visible and infrared light as well as microwaves, ultrasound and heat. Effects may be physical, chemical or biological. Related subjects include (but are not limited to) dosimetry methods and instrumentation, isotope techniques and studies with chemical agents contributing to the understanding of radiation effects.
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