Jennifer C. Girón Duque, Meghan Balk, W. Dahdul, H. Lapp, István Mikó, Elie Alhajjar, Brenen M. Wynd, Sergei Tarasov, Christopher Lawrence, Basanta Khakurel, Arthur Porto, Lin Yan, Isadora E Fluck, D. Porto, Joseph Keating, I. Borokini, Katja Seltmann, G. Montanaro, Paula M. Mabee
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引用次数: 0
摘要
Phenoscape项目开发了基于本体论的工具和知识库,能够整合和发现科学文献中的跨物种表型。Phenoscape TraitFest 2023活动旨在推广创新应用,这些应用采用了Phenoscape知识库中的数据及其相应的语义化工具、算法和基础设施所支持的功能。该活动汇集了 26 名参与者,包括生物多样性信息学、分类学和系统发生学领域的专家,以及来自各种生命科学编程工具包和系统发生学软件项目的软件开发人员,共同参加了为期四天的紧张的软件编码协作活动。此次活动是基于开放空间技术(Open Space Technology)方法而设计的实践研讨会,与会者自行组织成小组,就共同的研究兴趣进行合作规划和工作。我们将介绍工作坊的组织方式、开发的项目、工作坊取得的成果,以及将不同的参与者聚集在一起,在协作环境中开展富有成效的工作所面临的挑战。
Meeting Report for the Phenoscape TraitFest 2023 with Comments on Organising Interdisciplinary Meetings
The Phenoscape project has developed ontology-based tools and a knowledge base that enables the integration and discovery of phenotypes across species from the scientific literature. The Phenoscape TraitFest 2023 event aimed to promote innovative applications that adopt the capabilities supported by the data in the Phenoscape Knowledgebase and its corresponding semantics-enabled tools, algorithms and infrastructure. The event brought together 26 participants, including domain experts in biodiversity informatics, taxonomy and phylogenetics and software developers from various life-sciences programming toolkits and phylogenetic software projects, for an intense four-day collaborative software coding event. The event was designed as a hands-on workshop, based on the Open Space Technology methodology, in which participants self-organise into subgroups to collaboratively plan and work on their shared research interests. We describe how the workshop was organised, the projects developed and outcomes resulting from the workshop, as well as the challenges in bringing together a diverse group of participants to engage productively in a collaborative environment.