核碱基-富勒烯的吸附和形成能:第一原理模拟

IF 2.6 4区 物理与天体物理 Q2 PHYSICS, APPLIED International Journal of Modern Physics B Pub Date : 2024-03-25 DOI:10.1142/s021797922550050x
Nur Anggita Sari, Yosephine Novita Apriati, Ari Dwi Nugraheni, Sholihun
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引用次数: 0

摘要

利用密度泛函理论(DFT)方法进行了一项计算研究,以确定富勒烯 C60 上由脱氧核糖核酸/核糖核酸(DNA/RNA)核碱基分子组成的系统作为潜在基因递送系统的能量稳定性。通过研究腺嘌呤、胞嘧啶、鸟嘌呤、胸腺嘧啶和尿嘧啶核碱基与富勒烯 C59Si 分子之间形成的强几何键,评估了该系统用于基因递送和纳米医学应用的可行性。据观察,每种核碱基与富勒烯的键合亲和力都遵循尿嘧啶、鸟嘌呤、胞嘧啶、胸腺嘧啶、腺嘌呤的顺序。此外,还对吸附和形成能量进行了计算,以确定富勒烯结构中最稳定的构型。鸟嘌呤的稳定性最高,这表明它有潜力成为一种高效载体,将鸟嘌呤类遗传物质输送到细胞中。此外,富勒烯表面对胞嘧啶有很高的吸附倾向,胞嘧啶与富勒烯相互作用时的最低吸附能就证明了这一点。根据观察到的与 DNA/RNA 核碱基分子的强相互作用,突出了掺硅富勒烯 C60 作为基因传输系统的潜在应用。这些宝贵的见解将有助于开发高效的基因递送策略,并为推动基因治疗和纳米医学的发展提供了广阔的前景。
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Adsorption and formation energies of nucleobase–Fullerene: A first-principles simulation

A computational study was conducted using the density functional theory (DFT) method to determine the energy stability of a system composed of deoxyribonucleic acid/ribonucleic acid (DNA/RNA) nucleobase molecules on Fullerene C60 as a potential gene delivery system. The feasibility of the system for gene delivery and nanomedicine applications was assessed by examining the strong geometric bonds formed between Adenine, Cytosine, Guanine, Thymine, and Uracil nucleobases and C59Si molecules in close proximity to Fullerene. The bonding affinities of each nucleobase with Fullerene were observed to follow the order Uracil > Guanine > Cytosine > Thymine > Adenine. Furthermore, calculations of adsorption and formation energies were performed to determine the most stable configuration within the Fullerene structure. Guanine demonstrated the highest stability, indicating its potential as an efficient carrier for the delivery of guanine-based genetic material into cells. Additionally, the Fullerene surface exhibited a high propensity for Cytosine adherence, as evidenced by the lowest adsorption energy observed for the interaction between Cytosine and Fullerene. The potential application of Si-doped Fullerene C60 as a gene delivery system was highlighted, based on the strong interactions observed with DNA/RNA nucleobase molecules. These valuable insights will contribute to the development of efficient gene delivery strategies and offer promising prospects for advancing gene therapy and nanomedicine.

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来源期刊
International Journal of Modern Physics B
International Journal of Modern Physics B 物理-物理:凝聚态物理
CiteScore
3.70
自引率
11.80%
发文量
417
审稿时长
3.1 months
期刊介绍: Launched in 1987, the International Journal of Modern Physics B covers the most important aspects and the latest developments in Condensed Matter Physics, Statistical Physics, as well as Atomic, Molecular and Optical Physics. A strong emphasis is placed on topics of current interest, such as cold atoms and molecules, new topological materials and phases, and novel low dimensional materials. One unique feature of this journal is its review section which contains articles with permanent research value besides the state-of-the-art research work in the relevant subject areas.
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