通过 CHO 基因组尺度模型推动数字化生物制造。

IF 14.3 1区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Trends in biotechnology Pub Date : 2024-09-01 Epub Date: 2024-03-28 DOI:10.1016/j.tibtech.2024.03.001
Seo-Young Park, Dong-Hyuk Choi, Jinsung Song, Meiyappan Lakshmanan, Anne Richelle, Seongkyu Yoon, Cleo Kontoravdi, Nathan E Lewis, Dong-Yup Lee
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引用次数: 0

摘要

中国仓鼠卵巢(CHO)细胞的基因组尺度代谢模型(GEM)对于从机理上理解哺乳动物细胞的代谢和培养非常有价值。我们全面概述了过去和现在 CHO-GEMs 的发展情况以及通量平衡分析(FBA)框架内的硅学方法,重点介绍了它们在合理开发细胞系和改进生物工艺方面的实际效用。还有很多机会可以进一步扩大模型的覆盖范围,并为未来的应用建立考虑到不同细胞过程和数据的综合模型。在研究界的通力合作下,我们预计 CHO-GEM 将对日益数字化和动态控制的生物加工流水线起到关键作用,特别是因为它们可以成功地与人工智能(AI)和系统工程算法结合使用。
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Driving towards digital biomanufacturing by CHO genome-scale models.

Genome-scale metabolic models (GEMs) of Chinese hamster ovary (CHO) cells are valuable for gaining mechanistic understanding of mammalian cell metabolism and cultures. We provide a comprehensive overview of past and present developments of CHO-GEMs and in silico methods within the flux balance analysis (FBA) framework, focusing on their practical utility in rational cell line development and bioprocess improvements. There are many opportunities for further augmenting the model coverage and establishing integrative models that account for different cellular processes and data for future applications. With supportive collaborative efforts by the research community, we envisage that CHO-GEMs will be crucial for the increasingly digitized and dynamically controlled bioprocessing pipelines, especially because they can be successfully deployed in conjunction with artificial intelligence (AI) and systems engineering algorithms.

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来源期刊
Trends in biotechnology
Trends in biotechnology 工程技术-生物工程与应用微生物
CiteScore
28.60
自引率
1.20%
发文量
198
审稿时长
1 months
期刊介绍: Trends in Biotechnology publishes reviews and perspectives on the applied biological sciences, focusing on useful science applied to, derived from, or inspired by living systems. The major themes that TIBTECH is interested in include: Bioprocessing (biochemical engineering, applied enzymology, industrial biotechnology, biofuels, metabolic engineering) Omics (genome editing, single-cell technologies, bioinformatics, synthetic biology) Materials and devices (bionanotechnology, biomaterials, diagnostics/imaging/detection, soft robotics, biosensors/bioelectronics) Therapeutics (biofabrication, stem cells, tissue engineering and regenerative medicine, antibodies and other protein drugs, drug delivery) Agroenvironment (environmental engineering, bioremediation, genetically modified crops, sustainable development).
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