中国传统发酵白菜 "东北大白菜 "中微生物群的元基因组/元蛋白组研究

Yamin Zhang, Haiyang Yan, Xiangxiu Xu, Xiaowei Xiao, Yuan Yuan, Na Guo, Tiehua Zhang, Mengyao Li, Ling Zhu, Changhui Zhao, Zuozhao Wang, Haiqing Ye
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摘要

东北大麦(DBSC)具有复杂的微生物生态系统,其过程中微生物群落的组成和代谢尚未得到很好的研究。本文采用元基因组学和元蛋白组学技术揭示了东巴菜微生物群落的分类和代谢特征。结果表明,在细菌门和假单胞菌门中,主要是固着菌和蛋白菌,而魏氏菌、木薯球菌和白念珠菌则是主要的菌属。重要的代谢途径涉及糖酵解/葡萄糖生成[路径:Ko00010]、丙酮酸代谢[路径:Ko00620]、果糖和甘露糖代谢[路径:Ko00051]、甘氨酸以及丝氨酸和苏氨酸代谢[路径:Ko00260]。此外,相关代谢途径中的关键蛋白(dps、fliC、tsf、fusA、atpD、metQ、pgi、tpiA、eno、araS、bglA、tktA、gor、pdhD、aceE 和 gnd)也在发酵过程中富集。这项研究将有助于了解 DBSC 的发酵机制。
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Metagenomic/Metaproteomic Investigation of the Microbiota in Dongbei Suaicai, a Traditional Fermented Chinese Cabbage
Dongbei Suaicai (DBSC) has a complicated microbial ecosystem in which the composition and metabolism of microbial communities during the process have not been well explored. Here, combined metagenomic and metaproteomic technology was used to reveal the taxonomic and metabolic profiles of DBSC. The results showed that firmicutes and proteobacteria were the prevalent bacteria in phylum and Pseudomonas, while Weissella, Pediococcus, and Leuconostoc were the prevalent genus. The vital metabolic pathways were involved in glycolysis/gluconeogenesis [path: ko00010], as well as pyruvate metabolism [path: ko00620], fructose and mannose metabolism [path: Ko00051], glycine, and serine and threonine metabolism [path: Ko00260]. Moreover, the key proteins (dps, fliC, tsf, fusA, atpD, metQ, pgi, tpiA, eno, alaS, bglA, tktA, gor, pdhD, aceE, and gnd) in related metabolized pathways were enriched during fermentation. This study will aid in facilitating the understanding of the fermentation mechanisms of DBSC.
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