参与缺氧诱发心脏病的人类转录因子中的 SUMO 位点预测

Q3 Pharmacology, Toxicology and Pharmaceutics Defence Life Science Journal Pub Date : 2024-01-01 DOI:10.14429/dlsj.9.19455
Dolly Sharma, Anu Kumari, Manisha Kumari, Ramesh C. Meena
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引用次数: 0

摘要

蛋白质 SUMOylation 是一种可逆的、众所周知的细胞翻译后修饰过程。除了各种顺式和反式调控因子外,它还决定转录因子和 DNA 结合蛋白与染色质的结合。蛋白质 SUMOylation 的改变与多种疾病和发育异常有关。由于 SUMOylation 过程的动态性质和各种关键的实验室实验,确定 SUMO 结合位点的初步方法具有挑战性,而这些实验的成本非常高。因此,计算方法可以指导 SUMOylation 位点的实验鉴定,并为更好地理解细胞中的 SUMOylation 机制提供见解。我们从人类转录因子数据库中准备了一份重要的转录因子列表,并使用 GPS-SUMO、SUMO plot 和 JASSA 网络服务器预测了心脏转录因子中的 SUMO 结合位点。因此,本研究可能有助于揭示 SUMO 修饰在心脏发育和疾病中的意义,这为今后研究靶标特异性 SUMOylation 以鉴定新型治疗靶标和缺氧诱发心血管疾病的管理策略开辟了一条新途径。
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SUMO Sites Prediction in Human Transcription Factors Involved in Hypoxia induced Cardiac Illnesses
Protein SUMOylation is a reversible and well knownpost-translational modificationprocess of the cells. It may change a protein's cellular location, interactions, and possible structural shape before it develops to carry out its basic functions.Also, it decides the binding of transcription factors and DNA binding proteins tochromatin in addition to various cis and trans regulatory factors. Alterations in protein SUMOylation have been linked with a variety of disorders and developmental anomalies.Tentative approaches to identify SUMO binding sites are challenging due todynamic nature of the SUMOylation processand various critical lab experimentswhich are involved very high cost.Therefore, the computational methodologies may guide the experimental identification of SUMOylation sites and provide insights for improving comprehensionofSUMOylation mechanism in the cells.In this study, we identify the SUMO binding sites in transcription factors that are actively involved and have crucial roles in cardiac development andpathophysiology of the heart.A list of important transcription factors was preparedfrom thehuman transcription factor database.The GPS-SUMO, SUMO plot, and JASSA web serverswere used for the prediction of SUMO binding sites in cardiac transcription factors.We identified the SUMOylation of several novel, previously uncharacterized SUMO targetsthat are actively involved in thecardiovascular system.Thus, the present study may help to uncoverthe significance ofSUMO modificationin cardiac development and illnesses which creates a fresh avenue for future studies ontarget-specific SUMOylation for identification of novel therapeutic targets andmanagement strategies forhypoxia-induced cardiovascular disorders.
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来源期刊
Defence Life Science Journal
Defence Life Science Journal Pharmacology, Toxicology and Pharmaceutics-Pharmacology, Toxicology and Pharmaceutics (all)
CiteScore
0.80
自引率
0.00%
发文量
26
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