{"title":"一些苯并三唑衍生物的合成、体外抗 HIV-1RT 评估、分子建模、DFT 和急性口服毒性研究","authors":"Nigam Jyoti Maiti , Swastika Ganguly , Kiattawee Choowongkomon , Supaphorn Seetaha , Siriwan Saehlee , Thitinan Aiebchun","doi":"10.1016/j.jsb.2024.108094","DOIUrl":null,"url":null,"abstract":"<div><p>This study synthesized and evaluated a series of benzotriazole derivatives denoted 3(a-j) and 6(a-j) for their anti-HIV-1 RT activities compared to the standard drug efavirenz. Notably, compound <strong>3 h</strong>, followed closely by <strong>6 h</strong>, exhibited significant anti-HIV-1 RT efficacy relative to the standard drug. <em>In vivo</em> oral toxicity studies were conducted for the most active compound <strong>3 h</strong>, confirming its nontoxic nature to ascertain the safety profile. By employing molecular docking techniques, we explored the potential interactions between the synthesized compounds (ligands) and a target biomolecule (protein)(PDB ID 1RT2) at the molecular level. We undertook the molecular dynamics study of <strong>3 h</strong>, the most active compound, within the active binding pocket of the cocrystallized structure of HIV-1 RT (PDB ID 1RT2). We aimed to learn more about how biomolecular systems behave, interact, and change at the atomic or molecular level over time. Finally, the DFT-derived HOMO and LUMO orbitals, as well as analysis of the molecular electrostatic potential map, aid in discerning the reactivity characteristics of our molecule.</p></div>","PeriodicalId":17074,"journal":{"name":"Journal of structural biology","volume":null,"pages":null},"PeriodicalIF":3.0000,"publicationDate":"2024-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Synthesis, in vitro Anti-HIV-1RT evaluation, molecular modeling, DFT and acute oral toxicity studies of some benzotriazole derivatives\",\"authors\":\"Nigam Jyoti Maiti , Swastika Ganguly , Kiattawee Choowongkomon , Supaphorn Seetaha , Siriwan Saehlee , Thitinan Aiebchun\",\"doi\":\"10.1016/j.jsb.2024.108094\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>This study synthesized and evaluated a series of benzotriazole derivatives denoted 3(a-j) and 6(a-j) for their anti-HIV-1 RT activities compared to the standard drug efavirenz. Notably, compound <strong>3 h</strong>, followed closely by <strong>6 h</strong>, exhibited significant anti-HIV-1 RT efficacy relative to the standard drug. <em>In vivo</em> oral toxicity studies were conducted for the most active compound <strong>3 h</strong>, confirming its nontoxic nature to ascertain the safety profile. By employing molecular docking techniques, we explored the potential interactions between the synthesized compounds (ligands) and a target biomolecule (protein)(PDB ID 1RT2) at the molecular level. We undertook the molecular dynamics study of <strong>3 h</strong>, the most active compound, within the active binding pocket of the cocrystallized structure of HIV-1 RT (PDB ID 1RT2). We aimed to learn more about how biomolecular systems behave, interact, and change at the atomic or molecular level over time. Finally, the DFT-derived HOMO and LUMO orbitals, as well as analysis of the molecular electrostatic potential map, aid in discerning the reactivity characteristics of our molecule.</p></div>\",\"PeriodicalId\":17074,\"journal\":{\"name\":\"Journal of structural biology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2024-04-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of structural biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1047847724000340\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of structural biology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1047847724000340","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
本研究合成并评估了一系列苯并三唑衍生物,即 3(a-j) 和 6(a-j),与标准药物依非韦伦相比,这些衍生物具有抗 HIV-1 RT 活性。值得注意的是,与标准药物相比,化合物 3 h 和紧随其后的 6 h 具有显著的抗 HIV-1 RT 效能。对活性最强的化合物 3 h 进行了体内口服毒性研究,证实其无毒性,从而确定了其安全性。通过分子对接技术,我们探索了合成化合物(配体)与目标生物大分子(蛋白质)(PDB ID 1RT2)在分子水平上的潜在相互作用。我们在 HIV-1 RT 的共晶结构(PDB ID 1RT2)的活性结合袋中对最活跃的化合物 3 h 进行了分子动力学研究。我们的目的是进一步了解生物分子系统在原子或分子水平上的行为、相互作用和随时间变化的情况。最后,DFT 导出的 HOMO 和 LUMO 轨道以及分子静电位图分析有助于辨别我们分子的反应特性。
Synthesis, in vitro Anti-HIV-1RT evaluation, molecular modeling, DFT and acute oral toxicity studies of some benzotriazole derivatives
This study synthesized and evaluated a series of benzotriazole derivatives denoted 3(a-j) and 6(a-j) for their anti-HIV-1 RT activities compared to the standard drug efavirenz. Notably, compound 3 h, followed closely by 6 h, exhibited significant anti-HIV-1 RT efficacy relative to the standard drug. In vivo oral toxicity studies were conducted for the most active compound 3 h, confirming its nontoxic nature to ascertain the safety profile. By employing molecular docking techniques, we explored the potential interactions between the synthesized compounds (ligands) and a target biomolecule (protein)(PDB ID 1RT2) at the molecular level. We undertook the molecular dynamics study of 3 h, the most active compound, within the active binding pocket of the cocrystallized structure of HIV-1 RT (PDB ID 1RT2). We aimed to learn more about how biomolecular systems behave, interact, and change at the atomic or molecular level over time. Finally, the DFT-derived HOMO and LUMO orbitals, as well as analysis of the molecular electrostatic potential map, aid in discerning the reactivity characteristics of our molecule.
期刊介绍:
Journal of Structural Biology (JSB) has an open access mirror journal, the Journal of Structural Biology: X (JSBX), sharing the same aims and scope, editorial team, submission system and rigorous peer review. Since both journals share the same editorial system, you may submit your manuscript via either journal homepage. You will be prompted during submission (and revision) to choose in which to publish your article. The editors and reviewers are not aware of the choice you made until the article has been published online. JSB and JSBX publish papers dealing with the structural analysis of living material at every level of organization by all methods that lead to an understanding of biological function in terms of molecular and supermolecular structure.
Techniques covered include:
• Light microscopy including confocal microscopy
• All types of electron microscopy
• X-ray diffraction
• Nuclear magnetic resonance
• Scanning force microscopy, scanning probe microscopy, and tunneling microscopy
• Digital image processing
• Computational insights into structure