斑马鱼 CRISPR/Cas9 基因编辑本科课程。

Zebrafish Pub Date : 2024-04-01 DOI:10.1089/zeb.2023.0091
Renu Srivastava, Connor W Davison, Abigail G Krull, Seth M Entriken, Amanda Zumbrock, Maria Daniela Cortes Hidalgo, Kiernan J Adair, Anna M Escherich, Jonathan N Lara, Emma C Neverman, Megan Hodnefield, Elyse McElligtot, Elizabeth J Sandquist, Craig Ogilvie, Pascal J Lafontant, J. Essner
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引用次数: 0

摘要

我们为本科生开发了一学期一学分的研究体验课程,涉及使用 CRISPR/Cas9 编辑斑马鱼基因。该课程适用于本科生培训的各个阶段,最多可选四次。学生选择一个感兴趣的基因进行编辑,以此作为学期项目的基础。在选择基因时,鼓励对发育过程和人类疾病进行探索。作为课程的一部分,学生将使用基本的生物信息学工具,设计引导 RNA,注射斑马鱼胚胎,并分析基因编辑的分子后果和表型结果。在我们开设这门课程的 10 年间,每学期的注册人数从不到 10 人增加到 60 多人。每年,我们都会根据最近发表的基因编辑方法,选择不同的基因编辑策略进行探索。这些策略包括制作 CRISPants、靶向整合和大基因缺失。在本研究中,我们将介绍我们是如何构建该课程的,以及我们在过去三年中对该课程的评估。
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An Undergraduate Course in CRISPR/Cas9-Mediated Gene Editing in Zebrafish.
We have developed a one-credit semester-long research experience for undergraduate students that involves the use of CRISPR/Cas9 to edit genes in zebrafish. The course is available to students at all stages of their undergraduate training and can be taken up to four times. Students select a gene of interest to edit as the basis of their semester-long project. To select a gene, exploration of developmental processes and human disease is encouraged. As part of the course, students use basic bioinformatic tools, design guide RNAs, inject zebrafish embryos, and analyze both the molecular consequences of gene editing and phenotypic outcomes. Over the 10 years we have offered the course, enrollment has grown from less than 10 students to more than 60 students per semester. Each year, we choose a different gene editing strategy to explore based on recent publications of gene editing methodologies. These have included making CRISPants, targeted integrations, and large gene deletions. In this study, we present how we structure the course and our assessment of the course over the past 3 years.
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