VASARI-auto:胶质瘤磁共振成像的公平、高效和经济功能化

James K Ruffle, Samia Mohinta, Kelly Pegoretti Baruteau, Rebekah Rajiah, Faith Lee, Sebastian Brandner, Parashkev Nachev, Harpreet Hyare
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摘要

VASARI MRI 特征集是一个定量系统,旨在将胶质瘤成像描述标准化。VASARI 虽然有效,但推导 VASARI 需要耗费大量时间,而且在临床实践中很少使用。这是一个机器学习可以自动解决的问题。我们利用 1172 名患者的胶质瘤数据开发了 VASARI-auto,这是一款自动标注软件,适用于开源病灶掩膜和我们公开的肿瘤分割模型。与此同时,两位神经放射顾问独立量化了 100 个胶质母细胞瘤病例子样本中的 VASARI 特征。我们量化了1)神经放射医师与 VASARI-auto之间的一致性;2)绩效公平校准;3)经济劳动力分析;4)预测患者生存期的保真度。肿瘤分割符合当前的技术水平,而且无论年龄或性别都具有相同的性能。内部神经放射科医生之间的评定间差异最小,可与神经放射科医生和 VASARI-自动方法之间的差异相比,而 VASARI-自动方法之间的差异要大得多。神经放射医师执行 VASARI 所需的时间大大高于 VASARI-自动方法(每个病例的平均时间分别为 317 秒和 3 秒)。英国一家医院的劳动力分析预测,VASARI功能化三年将需要29,777个神经放射科顾问工时({\磅}1,574,935),而使用VASARI-auto可减少至332个计算小时({\磅}146电力)。VASARI-auto是一种高效的自动标记系统,在不同年龄或性别的患者中表现相当,如果用作决策支持工具,经济效益也很好,而且在下游患者生存预测方面的保真度并不逊色。未来的工作应该对此类工具进行改进和整合,以加强对患者的护理。
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VASARI-auto: equitable, efficient, and economical featurisation of glioma MRI
The VASARI MRI feature set is a quantitative system designed to standardise glioma imaging descriptions. Though effective, deriving VASARI is time-consuming and seldom used in clinical practice. This is a problem that machine learning could plausibly automate. Using glioma data from 1172 patients, we developed VASARI-auto, an automated labelling software applied to both open-source lesion masks and our openly available tumour segmentation model. In parallel, two consultant neuroradiologists independently quantified VASARI features in a subsample of 100 glioblastoma cases. We quantified: 1) agreement across neuroradiologists and VASARI-auto; 2) calibration of performance equity; 3) an economic workforce analysis; and 4) fidelity in predicting patient survival. Tumour segmentation was compatible with the current state of the art and equally performant regardless of age or sex. A modest inter-rater variability between in-house neuroradiologists was comparable to between neuroradiologists and VASARI-auto, with far higher agreement between VASARI-auto methods. The time taken for neuroradiologists to derive VASARI was substantially higher than VASARI-auto (mean time per case 317 vs. 3 seconds). A UK hospital workforce analysis forecast that three years of VASARI featurisation would demand 29,777 consultant neuroradiologist workforce hours ({\pounds}1,574,935), reducible to 332 hours of computing time (and {\pounds}146 of power) with VASARI-auto. The best-performing survival model utilised VASARI-auto features as opposed to those derived by neuroradiologists. VASARI-auto is a highly efficient automated labelling system with equitable performance across patient age or sex, a favourable economic profile if used as a decision support tool, and with non-inferior fidelity in downstream patient survival prediction. Future work should iterate upon and integrate such tools to enhance patient care.
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