预测弥漫大 B 细胞淋巴瘤预后风险和治疗反应性的新型 anoikis 相关特征。

IF 3.9 3区 医学 Q1 PATHOLOGY Expert Review of Molecular Diagnostics Pub Date : 2024-05-01 Epub Date: 2024-05-11 DOI:10.1080/14737159.2024.2351465
Mingze Guan, Hua Zhao, Qi Zhang, Li Li, Xiaobo Wang, Bo Tang
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引用次数: 0

摘要

背景:虽然 "anoikis "在癌症迁移、转移和侵袭中起作用,但在弥漫大B细胞淋巴瘤(DLBCL)中却鲜有报道:尽管anoikis在癌症迁移、转移和侵袭性中发挥作用,但在弥漫大B细胞淋巴瘤(DLBCL)中却鲜有报道:我们从 GEO 数据库中获取了 RNA 测序数据和匹配的临床数据。方法:我们从GEO数据库中获取了RNA测序数据和匹配的临床数据,在GSE10846训练队列中使用单变量Cox回归和LASSO回归建立了基于anoikis相关基因(ARGs)的风险特征,并在其他三个队列中进行了验证。通过 RT-qPCR 验证了 ARG 标志候选基因的表达。此外,我们还基于生物信息学方法预测了药物的半数最大抑制浓度(IC50),并通过细胞毒性测定获得了多柔比星、吉西他滨、IPA-3 和达沙替尼的实际 IC50:我们的研究发现,与对照组织相比,PTEN、PDK4、IGF1、HIF1A和CCND1在DLBCL组织中下调。根据基于ARG的风险评分特征确定的高风险组与较差的预后和免疫抑制环境有关,包括免疫抑制细胞的高浸润和一些免疫检查点。同时,基于八个变量的提名图在预测DLBCL预后方面比国际预后指数更准确。基于生物信息学方法的IC50预测表明,高危组中的DLBCL患者对多柔比星、IPA-3、来那度胺、吉西他滨和CEP.701更敏感,而低危组患者对顺铂和达沙替尼敏感。与预测结果一致的是,DLBCL细胞系的细胞毒性检测表明,在DLBCL患者中,高风险组对多柔比星和吉西他滨的敏感性更高,而低风险组对达沙替尼的敏感性更高:基于ARG的特征为DLBCL患者的预后预测和治疗优化提供了一个很有前景的方向。
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A novel anoikis-related signature predicts prognosis risk and treatment responsiveness in diffuse large B-cell lymphoma.

Background: Although anoikis plays a role in cancer metastasis and aggressiveness, it has rarely been reported in diffuse large B cell lymphoma (DLBCL).

Methods: We obtained RNA sequencing data and matched clinical data from the GEO database. An anoikis-related genes (ARGs)-based risk signature was developed in GSE10846 training cohort and validated in three other cohorts. Additionally, we predicted half-maximal inhibitory concentration (IC50) of drugs based on bioinformatics method and obtained the actual IC50 to some chemotherapy drugs via cytotoxicity assay.

Results: The high-risk group, as determined by our signature, was associated with worse prognosis and an immunosuppressive environment in DLBCL. Meanwhile, the nomogram based on eight variables had more accurate ability in forecasting the prognosis than the international prognostic index in DLBCL. The prediction of IC50 indicated that DLBCL patients in the high-risk group were more sensitive to doxorubicin, IPA-3, lenalidomide, gemcitabine, and CEP.701, while patients in the low-risk group were sensitive to cisplatin and dasatinib. Consistent with the prediction, cytotoxicity assay suggested the higher sensitivity to doxorubicin and gemcitabine and the lower sensitivity to dasatinib in the high-risk group in DLBCL.

Conclusion: The ARG-based signature may provide a promising direction for prognosis prediction and treatment optimization for DLBCL patients.

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来源期刊
CiteScore
6.60
自引率
0.00%
发文量
71
审稿时长
1 months
期刊介绍: Expert Review of Molecular Diagnostics (ISSN 1473-7159) publishes expert reviews of the latest advancements in the field of molecular diagnostics including the detection and monitoring of the molecular causes of disease that are being translated into groundbreaking diagnostic and prognostic technologies to be used in the clinical diagnostic setting. Each issue of Expert Review of Molecular Diagnostics contains leading reviews on current and emerging topics relating to molecular diagnostics, subject to a rigorous peer review process; editorials discussing contentious issues in the field; diagnostic profiles featuring independent, expert evaluations of diagnostic tests; meeting reports of recent molecular diagnostics conferences and key paper evaluations featuring assessments of significant, recently published articles from specialists in molecular diagnostic therapy. Expert Review of Molecular Diagnostics provides the forum for reporting the critical advances being made in this ever-expanding field, as well as the major challenges ahead in their clinical implementation. The journal delivers this information in concise, at-a-glance article formats: invaluable to a time-constrained community.
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