深入分析 PBPK 建模工具的选择:开放系统药理学社区的文献计量和社会网络分析。

André Dallmann PhD, Donato Teutonico PhD, Stephan Schaller PhD, Rolf Burghaus PhD, Sebastian Frechen MD
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引用次数: 0

摘要

自 1998 年 "开放源码计划 "为开放源码软件环境奠定基础以来,免费开放源码软件的普及率一直在稳步上升。模型信息药物发现与开发(MID3)是药物研究与开发的一个重要组成部分,它大量使用了计算模型,这些模型可以使用各种软件开发,其中包括开放系统药理学(OSP)软件(PK-Sim/MoBi),这是一种基于生理的药代动力学(PBPK)建模的免费开源软件工具。在本研究中,我们旨在调查 OSP 软件的影响力、应用领域和覆盖范围,以及在 2017 年至 2023 年间发表过 OSP 相关文章的组织之间的关系和合作模式。因此,我们对OSP相关出版物进行了文献计量分析,并对OSP相关出版物的作者所属组织进行了社会网络分析。在多个层面上,我们发现有证据表明,自 2017 年 OSP 成立以来,OSP 社区的规模及其在 MID3 社区中的知名度均有显著增长。具体来说,使用OSP软件的PubMed收录的PBPK相关文章的年发表率超过了使用任何软件的PBPK相关文章的发表率。我们的文献计量分析和网络分析表明,OSP 社区的扩展主要是由与该社区没有任何联系的新作者和组织推动的,这涉及到研究集群的新生和网络的整体多样化。这些研究结果表明,OSP 社区正在朝着更加细分、多样化和包容性更强的网络方向发展。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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In-Depth Analysis of the Selection of PBPK Modeling Tools: Bibliometric and Social Network Analysis of the Open Systems Pharmacology Community

Since the Open Source Initiative laid the foundation for the open source software environment in 1998, the popularity of free and open source software has been steadily increasing. Model-informed drug discovery and development (MID3), a key component of pharmaceutical research and development, heavily makes use of computational models which can be developed using various software including the Open Systems Pharmacology (OSP) software (PK-Sim/MoBi), a free and open source software tool for physiologically based pharmacokinetic (PBPK) modeling. In this study, we aimed to investigate the impact, application areas, and reach of the OSP software as well as the relationships and collaboration patterns between organizations having published OSP-related articles between 2017 and 2023. Therefore, we conducted a bibliometric analysis of OSP-related publications and a social network analysis of the organizations with which authors of OSP-related publications were affiliated. On several levels, we found evidence for a significant growth in the size of the OSP community as well as its visibility in the MID3 community since OSP's establishment in 2017. Specifically, the annual publication rate of PubMed-indexed PBPK-related articles using the OSP software outpaced that of PBPK-related articles using any software. Our bibliometric analysis and network analysis demonstrated that the expansion of the OSP community was predominantly driven by new authors and organizations without prior connections to the community involving the generation of research clusters de novo and an overall diversification of the network. These findings suggest an ongoing evolution of the OSP community toward a more segmented, diverse, and inclusive network.

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