生成高可靠性综合直肠癌数据库的自动化高通量平台

IF 3.3 Q2 ONCOLOGY JCO Clinical Cancer Informatics Pub Date : 2024-05-01 DOI:10.1200/CCI.23.00219
Neal Bhutiani, Mahmoud M G Yousef, Abdelrahman Yousef, Mohammad Zeineddine, Mark Knafl, Olivia Ratliff, Uditha P Fernando, Anastasia Turin, Fadl A Zeineddine, Jeff Jin, Kristin Alfaro-Munoz, Drew Goldstein, George J Chang, Scott Kopetz, John Paul Shen, Abhineet Uppal
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引用次数: 0

摘要

目的:动态操作平台可进行跨平台数据提取、整合和分析,但这些平台在大型肿瘤企业中的应用尚未见报道。本研究介绍了一种自动化、高保真提取、整合和验证跨平台肿瘤学数据的方法,该方法适用于在单一、高容量机构接受直肠癌治疗的患者:方法:使用动态操作平台识别2016年至2022年期间在MD安德森癌症中心接受治疗的直肠癌患者,这些患者的电子健康记录(EHR)中提供了磁共振成像(MRI)影像和术前治疗详情。采用适用于任何疾病部位的方法从电子病历中提取人口统计学、临床病理学、肿瘤突变、放射学和治疗数据。数据准确性通过人工审核进行评估。对核磁共振成像数据实施同步报告前后的准确性进行了测定:结果:共纳入了 516 名局部直肠癌患者。在机构采用同步报告后,动态操作平台从电子病历中提取T(肿瘤)类别数据的准确率为95%(使用同步报告前为87%),提取N(淋巴结)类别数据的准确率为88%(使用同步报告前为58%)。盆腔侧壁腺病的正确提取率为 94%,而使用同步报告前为 78%;壁外血管侵犯的准确率为 99%,而使用同步报告前为 89%。对于拥有同步数据源的患者,新辅助化疗和放疗数据的准确率为99%:结论:使用动态操作平台可以对接受直肠癌多模式治疗的患者的多参数肿瘤数据进行高保真的跨平台自动整合。这些流水线可适用于其他实体瘤,加上标准化报告,可提高临床研究的效率,并将可操作的研究结果转化为优化患者预后的方法。
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Automated, High-Throughput Platform to Generate a High-Reliability, Comprehensive Rectal Cancer Database.

Purpose: Dynamic operations platforms allow for cross-platform data extraction, integration, and analysis, although application of these platforms to large-scale oncology enterprises has not been described. This study presents a pipeline for automated, high-fidelity extraction, integration, and validation of cross-platform oncology data in patients undergoing treatment for rectal cancer at a single, high-volume institution.

Methods: A dynamic operations platform was used to identify patients with rectal cancer treated at MD Anderson Cancer Center between 2016 and 2022 who had magnetic resonance imaging (MRI) imaging and preoperative treatment details available in the electronic health record (EHR). Demographic, clinicopathologic, tumor mutation, radiographic, and treatment data were extracted from the EHR using a methodology adaptable to any disease site. Data accuracy was assessed by manual review. Accuracy before and after implementation of synoptic reporting was determined for MRI data.

Results: A total of 516 patients with localized rectal cancer were included. In the era after institutional adoption of synoptic reports, the dynamic operations platform extracted T (tumor) category data from the EHR with 95% accuracy compared with 87% before the use of synoptic reports, and N (lymph node) category with 88% compared with 58%. Correct extraction of pelvic sidewall adenopathy was 94% compared with 78%, and extramural vascular invasion accuracy was 99% compared with 89%. Neoadjuvant chemotherapy and radiation data were 99% accurate for patients who had synoptic data sources.

Conclusion: Using dynamic operations platforms enables automated cross-platform integration of multiparameter oncology data with high fidelity in patients undergoing multimodality treatment for rectal cancer. These pipelines can be adapted to other solid tumors and, together with standardized reporting, can increase efficiency in clinical research and the translation of actionable findings toward optimizing patient outcomes.

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CiteScore
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4.80%
发文量
190
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