生物信息学分析揭示了胃腺癌中巨噬细胞标记基因特征的预后意义

Zhipeng Li, Hui Chen, Zhongqing Chen, Lihe Xie, D. Pan
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摘要

背景:胃腺癌(GAC)是消化系统中发病率最高的恶性肿瘤:胃腺癌(GAC)是消化系统中发病率最高的恶性肿瘤。巨噬细胞已被证实在肿瘤微环境中发挥重要作用。方法:本文利用基因表达总库(GEO)中的单细胞RNA测序(scRNA-seq)图谱和癌症基因组图谱(TCGA)数据库中的大量RNA-seq数据构建了巨噬细胞标记基因特征(MMGS),以预测GAC患者的预后。随后,基于MMGS建立了一个风险评分模型来预测GAC患者的预后,并进一步在GEO队列中进行了验证。风险评分将患者分为高风险组和低风险组。根据风险评分和临床病理特征建立了一个提名图模型。结果显示ABCA1、CTHRC1、GADD45B、NPC2、PLTP、PRSS23 和 RNASE1 这七个基因被纳入风险评分模型。低风险评分的患者预后较好。MMGS 对预测 GAC 患者的预后具有良好的敏感性和特异性。风险评分是一个独立的预后因素。所构建的提名图在预测 GAC 预后方面表现出良好的可预测性和可靠性。结论总之,基于七个 MMGS 的风险评分模型在预测 GAC 患者的预后方面表现良好。我们的研究可为胃癌(GC)患者个性化治疗的临床决策提供新的见解。
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Bioinformatics Analysis Reveals Prognostic Significance of the Macrophage Marker Gene Signature in Gastric Adenocarcinoma
Background: Gastric adenocarcinoma (GAC) is a malignant tumor with the highest incidence in the digestive system. Macrophages have been proven to play important roles in tumor microenvironment. Methods: Herein, single-cell RNA sequencing (scRNA-seq) profiles from the Gene Expression Omnibus (GEO) and bulk RNA-seq data from the Cancer Genome Atlas (TCGA) database were utilized to construct a macrophage marker gene signature (MMGS) to predict the prognosis of GAC patients. Subsequently, a risk score model based on the MMGS was built to predict the prognosis of GAC patients; further, this was validated in the GEO cohort. The risk score categorized patients into the high-and low-risk groups. A nomogram model based on the risk score and clinic-pathological characteristics was developed. Results: Seven genes, ABCA1 , CTHRC1 , GADD45B , NPC2 , PLTP , PRSS23 , and RNASE1 , were included in the risk score model. Patients with a low-risk score showed a better prognosis. The MMGS had good sensitivity and specificity for predicting the prognosis inGAC patients. The risk score was an independent prognostic factor. The constructed nomogram exhibited favorable predictability and reliability for predicting GAC prognosis. Conclusion: In conclusion, the risk score model based on the seven MMGSs performed well in the predicting prognosis of GAC patients. Our study may provide new insights into clinical decision-making for the personalized treatment of patients with gastric cancer (GC).
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