红藻角叉菜(红藻门,Halymeniales)的有丝分裂基因组特征和系统发育分析

IF 2.9 4区 生物学 Q1 EDUCATION & EDUCATIONAL RESEARCH Journal of Genetics Pub Date : 2024-05-18 DOI:10.1007/s12041-024-01471-z
Maheshkumar Prakash Patil, Young-Ryun Kim, Shinya Nakashita, Jong-Oh Kim, Kyunghoi Kim
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引用次数: 0

摘要

有丝分裂基因组是分类和进化研究的重要工具。目前,已有一些完整的红藻有丝分裂基因组被报道。我们报告了冈村藻(Grateloupia cornea Okamura, 1913)(红藻门,Halymeniales)的完整有丝分裂基因组序列。该基因组周长为 30,595 bp,具有强偏倚 [AT] = 66.9%。与其他大多数 Grateloupia 物种一样,它的 cox1 基因中有一个 II 组内含子。最大似然法和最大拟合分析表明,G. cornea 与 G. asiatica 的亲缘关系更近。这表明,大多数 Grateloupia 种类的 cox1 ORF 中的 II 组内含子存在于它们的共同祖先中,而在 G. asiatica 中丢失了。具有已知有丝分裂基因组序列的 7 个 Grateloupia 物种仍为单系,与 Polyopes 属为姐妹类群。完整的线粒体基因组数据对今后的线粒体基因组比较分析研究、广泛了解基因内容和组织、红叶植物中 cox1 内含子的进化以及系统发育分析都很有价值。
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Mitogenome features and phylogenetic analysis of red algae, Grateloupia cornea (Rhodophyta, Halymeniales)

The mitogenome is an important tool for taxonomic and evolutionary investigation. Here, a few complete mitogenomes of red algae have been reported. We have reported the complete mitogenome sequences of Grateloupia cornea Okamura, 1913 (Rhodophyta, Halymeniales). The genome is 30,595 bp in circumference, and has a strongly biased [AT] = 66.9%. Like most other Grateloupia species, it has a group II intron in the cox1 gene. Maximum likelihood and maximum parsimony analyses showed that G. cornea is more closely related to G. asiatica. This shows that the group II intron in the cox1 ORF present in most species of Grateloupia was present in their common ancestor, and uniquely lost in G. asiatica. The seven Grateloupia species with known mitogenome sequences remain monophyletic, with the genus Polyopes as sister taxon. The complete mitochondrial genome data will be valuable for future research on comparative mitochondrial genome analysis, an extensive understanding of gene content and organization, evolution of the cox1 intron in Rhodophyta as well as phylogenetic analysis.

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来源期刊
Journal of Genetics
Journal of Genetics 生物-遗传学
CiteScore
3.10
自引率
0.00%
发文量
72
审稿时长
1 months
期刊介绍: The journal retains its traditional interest in evolutionary research that is of relevance to geneticists, even if this is not explicitly genetical in nature. The journal covers all areas of genetics and evolution,including molecular genetics and molecular evolution.It publishes papers and review articles on current topics, commentaries and essayson ideas and trends in genetics and evolutionary biology, historical developments, debates and book reviews. From 2010 onwards, the journal has published a special category of papers termed ‘Online Resources’. These are brief reports on the development and the routine use of molecular markers for assessing genetic variability within and among species. Also published are reports outlining pedagogical approaches in genetics teaching.
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