调查从李斯特溶菌素 S 中提取的一种新型多肽对金黄色葡萄球菌、大肠杆菌和植物大肠杆菌的抗菌作用:一项硅学和体外研究。

IF 2.3 Q3 BIOCHEMICAL RESEARCH METHODS Bioinformatics and Biology Insights Pub Date : 2024-05-15 eCollection Date: 2024-01-01 DOI:10.1177/11779322241252513
Mojgan Sarabi Nobakht, Kaveh Bazyar, Mohammad Sadegh Ghalyanchi Langeroudi, Mandana Mirzaei, Mehdi Goudarzi, Ali Shivaee
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引用次数: 0

摘要

目的:抗生素耐药性的出现是当今最重要的问题之一。对抗菌肽(AMPs)进行修饰可以提高其效果。本研究确认了李斯特溶菌素 S(LLS)作为一种多肽毒素的活性区,并通过修饰该区域评估了其抗菌特性:方法:提取序列后,用 PEP-FOLD3 预测了 LLS 的结构。AntiBP 和 AMPA 服务器确定了其抗菌活性位点。通过在其 3 端和 N 端添加精氨酸残基对其进行了修饰。评估了它对金黄色葡萄球菌、大肠杆菌和植物乳杆菌的抗菌特性:AntiBP 和 AntiBP 服务器的结果表明,由 15 个氨基酸组成的区域具有最强的抗菌性(得分 = 1.696)。在所选区域加入精氨酸后,理化评价和抗菌特性表明,所设计的多肽是一种稳定的 AMP,带 4 个正电荷,对人类红细胞无毒性,并具有抗原性。体外试验和菌落计数结果表明,与对照样品相比,在不同的时间,它能使金黄色葡萄球菌、大肠杆菌和植物大肠杆菌的数量显著减少:即将开展的研究表明,识别和增强天然肽的活性位点有助于抗击细菌。
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Investigating the Antimicrobial Effects of a Novel Peptide Derived From Listeriolysin S on S aureus, E coli, and L plantarum: An In Silico and In Vitro Study.

Aims: The emergence of antibiotic resistance is one of the most significant issues today. Modifying antimicrobial peptides (AMPs) can improve their effects. In this study, the active region of Listeriolysin S (LLS) as a peptidic toxin has been recognized, and its antibacterial properties have been evaluated by modifying that region.

Methods: After extracting the sequence, the structure of LLS was predicted by PEP-FOLD3. AntiBP and AMPA servers identified its antimicrobial active site. It was modified by adding arginine residue to its 3- and N-terminal regions. Its antimicrobial properties on Staphylococcus aureus, Escherichia coli, and Lactobacillus Plantarum were estimated.

Findings: The results of AntiBP and AntiBP servers demonstrated that a region of 15 amino acids has the most antimicrobial properties (score = 1.696). After adding arginine to the chosen region, the physicochemical evaluation and antimicrobial properties revealed that the designed peptide is a stable AMP with a positive charge of 4, which is not toxic to human erythrocyte cells and has antigenic properties. The results of in vitro and colony counting indicated that at different hours, it caused a significant reduction in the count of S aureus, E coli, and L Plantarum compared with the control sample.

Conclusions: Upcoming research implies that identifying and enhancing the active sites of natural peptides can help combat bacteria.

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来源期刊
Bioinformatics and Biology Insights
Bioinformatics and Biology Insights BIOCHEMICAL RESEARCH METHODS-
CiteScore
6.80
自引率
1.70%
发文量
36
审稿时长
8 weeks
期刊介绍: Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.
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