ChatGPT 对计算生物学家的编程到底有多大帮助?

IF 0.9 4区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY Journal of Bioinformatics and Computational Biology Pub Date : 2024-04-01 Epub Date: 2024-05-22 DOI:10.1142/S021972002471001X
Chowdhury Rafeed Rahman, Limsoon Wong
{"title":"ChatGPT 对计算生物学家的编程到底有多大帮助?","authors":"Chowdhury Rafeed Rahman, Limsoon Wong","doi":"10.1142/S021972002471001X","DOIUrl":null,"url":null,"abstract":"<p><p>ChatGPT, a recently developed product by openAI, is successfully leaving its mark as a multi-purpose natural language based chatbot. In this paper, we are more interested in analyzing its potential in the field of computational biology. A major share of work done by computational biologists these days involve coding up bioinformatics algorithms, analyzing data, creating pipelining scripts and even machine learning modeling and feature extraction. This paper focuses on the potential influence (both positive and negative) of ChatGPT in the mentioned aspects with illustrative examples from different perspectives. Compared to other fields of computer science, computational biology has (1) less coding resources, (2) more sensitivity and bias issues (deals with medical data), and (3) more necessity of coding assistance (people from diverse background come to this field). Keeping such issues in mind, we cover use cases such as code writing, reviewing, debugging, converting, refactoring, and pipelining using ChatGPT from the perspective of computational biologists in this paper.</p>","PeriodicalId":48910,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":" ","pages":"2471001"},"PeriodicalIF":0.9000,"publicationDate":"2024-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"How much can ChatGPT really help computational biologists in programming?\",\"authors\":\"Chowdhury Rafeed Rahman, Limsoon Wong\",\"doi\":\"10.1142/S021972002471001X\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>ChatGPT, a recently developed product by openAI, is successfully leaving its mark as a multi-purpose natural language based chatbot. In this paper, we are more interested in analyzing its potential in the field of computational biology. A major share of work done by computational biologists these days involve coding up bioinformatics algorithms, analyzing data, creating pipelining scripts and even machine learning modeling and feature extraction. This paper focuses on the potential influence (both positive and negative) of ChatGPT in the mentioned aspects with illustrative examples from different perspectives. Compared to other fields of computer science, computational biology has (1) less coding resources, (2) more sensitivity and bias issues (deals with medical data), and (3) more necessity of coding assistance (people from diverse background come to this field). Keeping such issues in mind, we cover use cases such as code writing, reviewing, debugging, converting, refactoring, and pipelining using ChatGPT from the perspective of computational biologists in this paper.</p>\",\"PeriodicalId\":48910,\"journal\":{\"name\":\"Journal of Bioinformatics and Computational Biology\",\"volume\":\" \",\"pages\":\"2471001\"},\"PeriodicalIF\":0.9000,\"publicationDate\":\"2024-04-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Bioinformatics and Computational Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1142/S021972002471001X\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/5/22 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q4\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Bioinformatics and Computational Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1142/S021972002471001X","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/5/22 0:00:00","PubModel":"Epub","JCR":"Q4","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

ChatGPT 是 openAI 最近开发的一款产品,作为一款基于自然语言的多功能聊天机器人,它成功地留下了自己的印记。在本文中,我们更感兴趣的是分析它在计算生物学领域的潜力。如今,计算生物学家的大部分工作都涉及生物信息学算法编码、数据分析、创建流水线脚本,甚至机器学习建模和特征提取。本文将从不同角度举例说明 ChatGPT 在上述方面的潜在影响(包括正面和负面影响)。与计算机科学的其他领域相比,计算生物学具有以下特点:(1)编码资源较少;(2)敏感性和偏差问题较多(涉及医学数据);(3)更需要编码帮助(来自不同背景的人员进入这一领域)。考虑到这些问题,我们在本文中从计算生物学家的角度出发,介绍了使用 ChatGPT 进行代码编写、审查、调试、转换、重构和流水线等工作的用例。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
How much can ChatGPT really help computational biologists in programming?

ChatGPT, a recently developed product by openAI, is successfully leaving its mark as a multi-purpose natural language based chatbot. In this paper, we are more interested in analyzing its potential in the field of computational biology. A major share of work done by computational biologists these days involve coding up bioinformatics algorithms, analyzing data, creating pipelining scripts and even machine learning modeling and feature extraction. This paper focuses on the potential influence (both positive and negative) of ChatGPT in the mentioned aspects with illustrative examples from different perspectives. Compared to other fields of computer science, computational biology has (1) less coding resources, (2) more sensitivity and bias issues (deals with medical data), and (3) more necessity of coding assistance (people from diverse background come to this field). Keeping such issues in mind, we cover use cases such as code writing, reviewing, debugging, converting, refactoring, and pipelining using ChatGPT from the perspective of computational biologists in this paper.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Bioinformatics and Computational Biology
Journal of Bioinformatics and Computational Biology MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
2.10
自引率
0.00%
发文量
57
期刊介绍: The Journal of Bioinformatics and Computational Biology aims to publish high quality, original research articles, expository tutorial papers and review papers as well as short, critical comments on technical issues associated with the analysis of cellular information. The research papers will be technical presentations of new assertions, discoveries and tools, intended for a narrower specialist community. The tutorials, reviews and critical commentary will be targeted at a broader readership of biologists who are interested in using computers but are not knowledgeable about scientific computing, and equally, computer scientists who have an interest in biology but are not familiar with current thrusts nor the language of biology. Such carefully chosen tutorials and articles should greatly accelerate the rate of entry of these new creative scientists into the field.
期刊最新文献
The use of 4D data-independent acquisition-based proteomic analysis and machine learning to reveal potential biomarkers for stress levels. Construction of a multi-tissue compound-target interaction network of Qingfei Paidu decoction in COVID-19 treatment based on deep learning and transcriptomic analysis. PCA-constrained multi-core matrix fusion network: A novel approach for cancer subtype identification. Gtie-Rt: A comprehensive graph learning model for predicting drugs targeting metabolic pathways in human. NDMNN: A novel deep residual network based MNN method to remove batch effects from scRNA-seq data.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1