MechanoBase:组织和细胞力学综合数据库。

IF 4.3 3区 材料科学 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC ACS Applied Electronic Materials Pub Date : 2024-05-28 DOI:10.1093/database/baae040
Yanhong Xiong, Shiyu Li, Yuxuan Zhang, Qianqian Chen, Mengtan Xing, Yong Zhang, Qi Wang
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引用次数: 0

摘要

组织和细胞的机械特性对无数生物过程有着至关重要的影响,并能在很大程度上改变各种疾病的病程。物理科学中出现的各种方法现在可以精确量化细胞力以及组织和细胞的机械特性。尽管生物学、生物工程和医学等领域对组织和细胞力学的兴趣与日俱增,但仍明显缺乏一个全面且易于获取的相关信息库。为了填补这一空白,我们建立了一个全面的组织和细胞力学数据库 MechanoBase,从 5634 篇 PubMed 文章中收集了 57 480 条记录。MechanoBase 中存档的记录包括一系列机械特性和力,如模量和牵引力,这些都是通过各种技术方法测量的。这些测量结果涵盖了在不同条件下研究的 400 多个物种的数百个生物样本。为了实现广泛的适用性,我们设计的 MechanoBase 具有用户友好的搜索、浏览和数据下载功能,使其成为在各种生物环境中探索生物力学属性的多功能工具。此外,我们还增加了补充资源,包括常用技术的原理、机械生物学术语的概念以及相关基因在细胞和组织水平上的表达,为科学家提供了前所未有的获取该研究领域丰富知识的途径。数据库网址:https://zhanglab-web.tongji.edu.cn/mechanobase/ 和 https://compbio-zhanglab.org/mechanobase/。
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MechanoBase: a comprehensive database for the mechanics of tissues and cells.

Mechanical aspects of tissues and cells critically influence a myriad of biological processes and can substantially alter the course of diverse diseases. The emergence of diverse methodologies adapted from physical science now permits the precise quantification of the cellular forces and the mechanical properties of tissues and cells. Despite the rising interest in tissue and cellular mechanics across fields like biology, bioengineering and medicine, there remains a noticeable absence of a comprehensive and readily accessible repository of this pertinent information. To fill this gap, we present MechanoBase, a comprehensive tissue and cellular mechanics database, curating 57 480 records from 5634 PubMed articles. The records archived in MechanoBase encompass a range of mechanical properties and forces, such as modulus and tractions, which have been measured utilizing various technical approaches. These measurements span hundreds of biosamples across more than 400 species studied under diverse conditions. Aiming for broad applicability, we design MechanoBase with user-friendly search, browsing and data download features, making it a versatile tool for exploring biomechanical attributes in various biological contexts. Moreover, we add complementary resources, including the principles of popular techniques, the concepts of mechanobiology terms and the cellular and tissue-level expression of related genes, offering scientists unprecedented access to a wealth of knowledge in this field of research. Database URL: https://zhanglab-web.tongji.edu.cn/mechanobase/ and https://compbio-zhanglab.org/mechanobase/.

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来源期刊
CiteScore
7.20
自引率
4.30%
发文量
567
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