重复 DNA 和逆转录序列的染色体图谱及其对栉水母科染色体进化过程的影响。

IF 2.3 Q2 ECOLOGY BMC ecology and evolution Pub Date : 2024-05-30 DOI:10.1186/s12862-024-02262-x
José Francisco de Sousa E Souza, Erika Milena Corrêa Guimarães, Vanessa Susan Pinheiro Figliuolo, Simone Cardoso Soares, Marcelo de Bello Cioffi, Francisco de Menezes Cavalcante Sassi, Eliana Feldberg
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摘要

栉水母科(Ctenoluciidae)是由栉水母属(C. beani和C. hujeta)和Boulengerella属(B. cuvieri、B. lateristriga、B. lucius、B. maculata和B. xyrekes)组成的新热带淡水鱼科,其36条染色体的二倍体数目保持不变,端粒序列与核糖体DNA有很强的关联。在本研究中,我们对布伦盖拉(Boulengerella)和栉水母(Ctenolucius hujeta)的微卫星和转座元件(TEs)进行了染色体图谱绘制。我们旨在了解这些序列在这些生物基因组中的分布情况及其对该群体染色体进化的影响。我们的研究结果表明,重复序列可能在该科的核型多样化过程中发挥了积极作用,尤其是在染色体热点的形成过程中。我们证明了(GATA)n 序列也在 18 S rDNA 位点形成的次级收缩中积累,该位点在所有 Boulengerella 种类的雌雄个体中都显示出一致的大小异形,这表明了性染色体分化的初始过程。
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Chromosomal mapping of repetitive DNA and retroelement sequences and its implications for the chromosomal evolution process in Ctenoluciidae (Characiformes).

Ctenoluciidae is a Neotropical freshwater fish family composed of two genera, Ctenolucius (C. beani and C. hujeta) and Boulengerella (B. cuvieri, B. lateristriga, B. lucius, B. maculata, and B. xyrekes), which present diploid number conservation of 36 chromosomes and a strong association of telomeric sequences with ribosomal DNAs. In the present study, we performed chromosomal mapping of microsatellites and transposable elements (TEs) in Boulengerella species and Ctenolucius hujeta. We aim to understand how those sequences are distributed in these organisms' genomes and their influence on the chromosomal evolution of the group. Our results indicate that repetitive sequences may had an active role in the karyotypic diversification of this family, especially in the formation of chromosomal hotspots that are traceable in the diversification processes of Ctenoluciidae karyotypes. We demonstrate that (GATA)n sequences also accumulate in the secondary constriction formed by the 18 S rDNA site, which shows consistent size heteromorphism between males and females in all Boulengerella species, suggesting an initial process of sex chromosome differentiation.

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