利用先进的计算技术和实验验证评估氧白藜芦醇与各种 β-环糊精衍生物的溶解性、稳定性和包合络合作用

IF 2.6 4区 生物学 Q2 BIOLOGY Computational Biology and Chemistry Pub Date : 2024-06-01 DOI:10.1016/j.compbiolchem.2024.108111
Saba Ali , Aamir Aman , Kowit Hengphasatporn , Lipika Oopkaew , Bunyaporn Todee , Ryo Fujiki , Ryuhei Harada , Yasuteru Shigeta , Kuakarun Krusong , Kiattawee Choowongkomon , Warinthorn Chavasiri , Peter Wolschann , Panupong Mahalapbutr , Thanyada Rungrotmongkol
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引用次数: 0

摘要

氧白藜芦醇(OXY)是桑葚果实中的一种天然硬脂类化合物,因其多种药理特性而闻名。然而,由于水溶性低和生物利用度有限,其临床应用受到阻碍。本研究采用硅学和体外实验研究了 OXY 与 β-环糊精(βCD)及其三种类似物(二甲基-β-环糊精(DMβCD)、羟丙基-β-环糊精(HPβCD)和磺丁基-β-环糊精(SBEβCD))的包合复合物。分子对接显示了 OXY 的两种结合方向,即 4′,6′-二羟基苯基(A-形式)和 5,7- 苯二醇环(B-形式)。分子动力学模拟表明,OXY/SBEβCD 通过两种不同的取向与 βCD 形成包合物复合物,OXY/SBEβCD 在疏水腔中表现出最大的原子接触和最小的溶剂暴露面积。这些结果与使用 MM/GBSA 方法评估 OXY/SBEβCD 时观察到的最高结合亲和力十分吻合。除了传统的模拟方法外,还采用了配体结合平行级联选择分子动力学方法来研究药物如何进入疏水空腔并与之相容。硅学结果与稳定性常数一致:SBEβCD(2060 M-1)、HPβCD(1860 M-1)、DMβCD(1700 M-1)和 βCD(1420 M-1)。所有复合物都表现出 1:1 的结合模式(AL 型),其中 SBEβCD 可提高 OXY 的溶解度(25 倍)。扫描电镜显微照片、DSC 热图、傅立叶变换红外光谱和 1H NMR 光谱证实了包合物的形成,揭示了新的表面形态、独特的热行为和新的峰值。值得注意的是,包合物(尤其是 OXY/DMβCD、OXY/HPβCD 和 OXY/SBEβCD)对乳腺癌细胞株 MCF-7 增殖的抑制作用明显优于单独的 OXY。
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Evaluating solubility, stability, and inclusion complexation of oxyresveratrol with various β-cyclodextrin derivatives using advanced computational techniques and experimental validation

Oxyresveratrol (OXY), a natural stilbenoid in mulberry fruits, is known for its diverse pharmacological properties. However, its clinical use is hindered by low water solubility and limited bioavailability. In the present study, the inclusion complexes of OXY with β-cyclodextrin (βCD) and its three analogs, dimethyl-β-cyclodextrin (DMβCD), hydroxypropyl-β-cyclodextrin (HPβCD) and sulfobutylether-β-cyclodextrin (SBEβCD), were investigated using in silico and in vitro studies. Molecular docking revealed two binding orientations of OXY, namely, 4′,6′-dihydroxyphenyl (A-form) and 5,7-benzenediol ring (B-form). Molecular Dynamics simulations suggested the formation of inclusion complexes with βCDs through two distinct orientations, with OXY/SBEβCD exhibiting maximum atom contacts and the lowest solvent-exposed area in the hydrophobic cavity. These results corresponded well with the highest binding affinity observed in OXY/SBEβCD when assessed using the MM/GBSA method. Beyond traditional simulation methods, Ligand-binding Parallel Cascade Selection Molecular Dynamics method was employed to investigate how the drug enters and accommodates within the hydrophobic cavity. The in silico results aligned with stability constants: SBEβCD (2060 M−1), HPβCD (1860 M−1), DMβCD (1700 M−1), and βCD (1420 M−1). All complexes exhibited a 1:1 binding mode (AL type), with SBEβCD enhancing OXY solubility (25-fold). SEM micrographs, DSC thermograms, FT-IR and 1H NMR spectra confirm the inclusion complex formation, revealing novel surface morphologies, distinctive thermal behaviors, and new peaks. Notably, the inhibitory impact on the proliferation of breast cancer cell lines, MCF-7, exhibited by inclusion complexes particularly OXY/DMβCD, OXY/HPβCD, and OXY/SBEβCD were markedly superior compared to that of OXY alone.

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来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
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