在多个图形模型中同时对网络进行聚类和估算。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2024-06-05 DOI:10.1093/biostatistics/kxae015
Gen Li, Miaoyan Wang
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引用次数: 0

摘要

高斯图形模型被广泛用于研究变量之间的依赖结构。当样本来自多个条件或群体时,由于多个图形模型具有跨群体借力的能力,因此需要对其进行联合分析。然而,现有的方法往往忽略了群体间不同程度的相似性,导致结果不尽人意。此外,在许多应用中,学习种群级聚类结构本身也是特别令人感兴趣的。在本文中,我们开发了一种名为 "通过张量分解同时聚类和估计网络"(SCENT)的新方法,可同时对多个种群的图形模型进行聚类和估计。来自不同种群的精确度矩阵被独特地组织成一个三向张量阵列,并提出了一个低秩稀疏模型,用于联合种群聚类和网络估计。我们开发了用于模型拟合的惩罚似然法和增强拉格朗日算法。我们还确定了聚类精度和估计精度矩阵的规范一致性。我们通过全面的模拟研究证明了所提方法的有效性。该方法在基因型-组织表达多组织基因表达数据中的应用,为我们了解多脑组织的组织聚类和基因共表达模式提供了重要的启示。
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Simultaneous clustering and estimation of networks in multiple graphical models.

Gaussian graphical models are widely used to study the dependence structure among variables. When samples are obtained from multiple conditions or populations, joint analysis of multiple graphical models are desired due to their capacity to borrow strength across populations. Nonetheless, existing methods often overlook the varying levels of similarity between populations, leading to unsatisfactory results. Moreover, in many applications, learning the population-level clustering structure itself is of particular interest. In this article, we develop a novel method, called Simultaneous Clustering and Estimation of Networks via Tensor decomposition (SCENT), that simultaneously clusters and estimates graphical models from multiple populations. Precision matrices from different populations are uniquely organized as a three-way tensor array, and a low-rank sparse model is proposed for joint population clustering and network estimation. We develop a penalized likelihood method and an augmented Lagrangian algorithm for model fitting. We also establish the clustering accuracy and norm consistency of the estimated precision matrices. We demonstrate the efficacy of the proposed method with comprehensive simulation studies. The application to the Genotype-Tissue Expression multi-tissue gene expression data provides important insights into tissue clustering and gene coexpression patterns in multiple brain tissues.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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