癌症遗传学、突变检测、基因表达分析和综合征识别中的迁移学习

Cancers Pub Date : 2024-06-04 DOI:10.3390/cancers16112138
Hamidreza Ashayeri, Navid Sobhi, Paweł Pławiak, Siamak Pedrammehr, R. Alizadehsani, Ali Jafarizadeh
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引用次数: 0

摘要

人工智能(AI),包括机器学习(ML)和深度学习(DL),已经彻底改变了医学研究,促进了药物发现和癌症诊断的进步。机器学习能识别数据中的模式,而深度学习则利用神经网络进行复杂的处理。迁移学习(TL)利用已有模型加快训练速度,解决了数据标记等预测建模难题。迁移学习在遗传学研究中显示出潜力,可改善基因表达分析、突变检测、遗传综合征识别以及基因型与表型关联等任务。本综述探讨了 TL 在克服突变检测、遗传综合征检测、基因表达或表型-基因型关联等方面的挑战中的作用。TL 在基因研究的各个方面都显示出了有效性。TL 提高了突变检测的准确性和效率,有助于识别基因异常。TL 可以提高综合征相关遗传模式的诊断准确性。此外,TL 在基因表达分析中发挥着重要作用,可准确预测基因表达水平及其相互作用。此外,TL 还能利用预先训练好的模型加强表型-基因型关联研究。总之,TL 通过改进突变预测、基因表达分析和遗传综合征检测,提高了人工智能的效率。未来的研究应侧重于增加领域相似性、扩大数据库和纳入临床数据,以实现更好的预测。
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Transfer Learning in Cancer Genetics, Mutation Detection, Gene Expression Analysis, and Syndrome Recognition
Artificial intelligence (AI), encompassing machine learning (ML) and deep learning (DL), has revolutionized medical research, facilitating advancements in drug discovery and cancer diagnosis. ML identifies patterns in data, while DL employs neural networks for intricate processing. Predictive modeling challenges, such as data labeling, are addressed by transfer learning (TL), leveraging pre-existing models for faster training. TL shows potential in genetic research, improving tasks like gene expression analysis, mutation detection, genetic syndrome recognition, and genotype–phenotype association. This review explores the role of TL in overcoming challenges in mutation detection, genetic syndrome detection, gene expression, or phenotype–genotype association. TL has shown effectiveness in various aspects of genetic research. TL enhances the accuracy and efficiency of mutation detection, aiding in the identification of genetic abnormalities. TL can improve the diagnostic accuracy of syndrome-related genetic patterns. Moreover, TL plays a crucial role in gene expression analysis in order to accurately predict gene expression levels and their interactions. Additionally, TL enhances phenotype–genotype association studies by leveraging pre-trained models. In conclusion, TL enhances AI efficiency by improving mutation prediction, gene expression analysis, and genetic syndrome detection. Future studies should focus on increasing domain similarities, expanding databases, and incorporating clinical data for better predictions.
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