建立二硫化相关lncRNA的预后特征,预测透明细胞肾细胞癌的生存和免疫状况

IF 1.4 4区 医学 Q4 ONCOLOGY Oncologie Pub Date : 2024-06-03 DOI:10.1515/oncologie-2024-0049
Jinhui Liu, Zhou Zhang, Lei Xiao, Yuhang Guo, Sheng Luo, Benzheng Zhou
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引用次数: 0

摘要

以细胞内二硫化物堆积为标志的一种新型细胞死亡途径--二硫ptosis是最近发现的一种细胞死亡形式。这项研究利用与二硫化相关的lncRNA建立了一个可靠的模型,用于预测透明细胞肾细胞癌(ccRCC)患者的预后和免疫相互作用。 ccRCC患者的数据,包括基因组和临床病理学细节,均来自癌症基因组图谱数据库。我们利用最小绝对收缩和选择算子(LASSO)以及回归分析构建了一个由12个二硫化相关lncRNAs(DRLs)组成的预后模型。该模型的有效性通过RECA-EU和GSE29609数据集进行了测试。 该预后模型包含12个DRLs--LINC01671、DOCK9-DT、AL078581.2、SPINT1-AS1、ZNF503-AS1、AL391883.1、AC002070.1、AP001372.2、AC068338.3、AC026401.3、AL355835.1和AL162377.1--在训练队列和验证队列中都能区分出生存率降低的高危ccRCC患者。通过 Cox 回归进行的进一步分析证实了该风险模型在总生存期 (OS) 方面的独立预后能力。功能富集分析表明,差异表达基因显著参与了免疫反应介质的产生。预后提名图将 DRL 与临床特征相结合,显示出很高的预测准确性,这一点已得到接收者操作特征曲线的证实。此外,对肿瘤微环境中不同风险类别的免疫功能和肿瘤突变负荷的评估也不尽相同,凸显了抗癌药物的潜在靶点。 研究结果表明,DRLs特征是一个有效的预后指标,可用于预测ccRCC患者对免疫疗法的反应。
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Establishment of a prognostic signature of disulfidptosis-related lncRNAs for predicting survival and immune landscape in clear cell renal cell carcinoma
A novel cell death pathway, disulfidptosis, marked by intracellular disulfide build-up, is a recently identified form of cell death. This study developed a dependable model using disulfidptosis-associated lncRNAs to predict outcomes and immune interactions in clear cell renal cell carcinoma (ccRCC) patients. Data from ccRCC patients, including genomic and clinicopathological details, were sourced from The Cancer Genome Atlas database. We employed the least absolute shrinkage and selection operator (LASSO) along with regression analyses to construct a prognostic model consisting of 12 disulfidptosis-related lncRNAs (DRLs). The model’s validity was tested using the RECA-EU and GSE29609 datasets. The prognostic model, incorporating 12 DRLs – LINC01671, DOCK9-DT, AL078581.2, SPINT1-AS1, ZNF503-AS1, AL391883.1, AC002070.1, AP001372.2, AC068338.3, AC026401.3, AL355835.1, and AL162377.1 – distinguished high-risk ccRCC patients with diminished survival rates in both the training and validation cohorts. Further analyses through Cox regression confirmed this risk model’s independent prognostic capability regarding overall survival (OS). Functional enrichment analysis indicated significant involvement of differentially expressed genes in immune response mediator production. A prognostic nomogram, integrating DRLs with clinical features, showed strong predictive accuracy as confirmed by receiver operating characteristic curves. Additionally, assessments of immune functionality and tumor mutation burden varied across risk categories in the tumor microenvironment, highlighting potential targets for anticancer drugs. The findings suggest the DRLs signature is a potent prognostic indicator and may serve to forecast responses to immunotherapy in ccRCC patients.
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来源期刊
Oncologie
Oncologie 医学-肿瘤学
CiteScore
1.30
自引率
11.10%
发文量
32
审稿时长
6-12 weeks
期刊介绍: Oncologie is aimed to the publication of high quality original research articles, review papers, case report, etc. with an active interest in vivo or vitro study of cancer biology. Study relating to the pathology, diagnosis, and advanced treatment of all types of cancers, as well as research from any of the disciplines related to this field of interest. The journal has English and French bilingual publication.
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