用 "高 "B1 场进行 CEST 实验,提高报告慢动力学交换参数的准确性

IF 2 3区 化学 Q3 BIOCHEMICAL RESEARCH METHODS Journal of magnetic resonance Pub Date : 2024-06-01 DOI:10.1016/j.jmr.2024.107699
Nihar Pradeep Khandave , D. Flemming Hansen , Pramodh Vallurupalli
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引用次数: 0

摘要

在过去十年中,化学交换饱和转移(CEST)核磁共振方法已成为表征发生在可见主态和 "不可见 "次态之间的生物分子构象动态的强大工具。CEST 实验能否检测到这些次态并提供精确的交换参数,取决于饱和期间是否使用了适当的 B1 场强。通常,我们会选择一对在交换率 kex 附近具有 ω1 (=2πB1) 值的 B1 场。在这里,我们将展示次态共振(R2,B)的横向弛豫率在确定 B1 场以获得信息量最大的数据集方面也起着至关重要的作用。使用 K=kexkex+R2,B12 ≥ kex 来指导 B1 的选择,而不是 kex,可以得到更精确的交换参数数据。通过研究 71 个残基 FF 结构域的两个突变体(kex 分别为 11 s-1 和 72 s-1)的构象交换,证明了在 K 的指导下需要更高的 B1 场。在这两种情况下,使用以 kex 为指导的 B1 场值对记录的 CEST 数据集进行分析都会导致不精确的交换参数,而使用以 K 为指导的 B1 值则会导致精确的特定位点交换参数。在使用 CEST 研究具有较大固有弛豫速率的位点的缓慢过程时,包括中小型蛋白质中的羰基位点、大型蛋白质中的酰胺 15N 位点,以及当次要态之间的交换导致次要态倾角变宽时,本文提出的结论将非常有价值。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Increasing the accuracy of exchange parameters reporting on slow dynamics by performing CEST experiments with ‘high’ B1 fields

Over the last decade chemical exchange saturation transfer (CEST) NMR methods have emerged as powerful tools to characterize biomolecular conformational dynamics occurring between a visible major state and ‘invisible’ minor states. The ability of the CEST experiment to detect these minor states, and provide precise exchange parameters, hinges on using appropriate B1 field strengths during the saturation period. Typically, a pair of B1 fields with ω1 (=2πB1) values around the exchange rate kex are chosen. Here we show that the transverse relaxation rate of the minor state resonance (R2,B) also plays a crucial role in determining the B1 fields that lead to the most informative datasets. Using K=kexkex+R2,B12 ≥ kex, to guide the choice of B1, instead of kex, leads to data wherefrom substantially more accurate exchange parameters can be derived. The need for higher B1 fields, guided by K, is demonstrated by studying the conformational exchange in two mutants of the 71 residue FF domain with kex ∼ 11 s−1 and ∼ 72 s−1, respectively. In both cases analysis of CEST datasets recorded using B1 field values guided by kex lead to imprecise exchange parameters, whereas using B1 values guided by K resulted in precise site-specific exchange parameters. The conclusions presented here will be valuable while using CEST to study slow processes at sites with large intrinsic relaxation rates, including carbonyl sites in small to medium sized proteins, amide 15N sites in large proteins and when the minor state dips are broadened due to exchange among the minor states.

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来源期刊
CiteScore
3.80
自引率
13.60%
发文量
150
审稿时长
69 days
期刊介绍: The Journal of Magnetic Resonance presents original technical and scientific papers in all aspects of magnetic resonance, including nuclear magnetic resonance spectroscopy (NMR) of solids and liquids, electron spin/paramagnetic resonance (EPR), in vivo magnetic resonance imaging (MRI) and spectroscopy (MRS), nuclear quadrupole resonance (NQR) and magnetic resonance phenomena at nearly zero fields or in combination with optics. The Journal''s main aims include deepening the physical principles underlying all these spectroscopies, publishing significant theoretical and experimental results leading to spectral and spatial progress in these areas, and opening new MR-based applications in chemistry, biology and medicine. The Journal also seeks descriptions of novel apparatuses, new experimental protocols, and new procedures of data analysis and interpretation - including computational and quantum-mechanical methods - capable of advancing MR spectroscopy and imaging.
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